CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os08g20967
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os08g20967
T11974_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os08g20967.1
CCHC ZF
656
673
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH93491
Xenopus laevis
AAH93491
N
0.000
AGAP005291
Anopheles gambiae
AGAP005291
N
0.000
Bm1_56085
Brugia malayi
Bm1_56085
N
0.000
CBG16526
Caenorhabditis briggsae
CBG16526
N
0.000
CJA02747
Caenorhabditis japonica
CJA02747
N
0.000
GH13999
Drosophila grimshawi
FBgn0121475
N
0.000
GJ24490
Drosophila virilis
FBgn0211570
N
0.000
GK22522
Drosophila willistoni
FBgn0224499
N
0.000
larp-1
Caenorhabditis elegans
R144.7
N
0.000
larp1
Xenopus tropicalis
ENSXETG00000008413
N
0.000
LOAG_00811
Loa loa
LOAG_00811
N
0.000
Minc10117
Meloidogyne incognita
Minc10117
N
0.000
Minc17549
Meloidogyne incognita
Minc17549
N
0.000
PASA_GEN_26200017
Daphnia pulex
PASA_GEN_26200017
N
0.000
Ppa-larp-1
Pristionchus pacificus
PPA28527
N
0.000
WUBG_00690
Wuchereria bancrofti
WUBG_00690
N
0.000