CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os10g09970
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g09970
T12203_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g09970.1
CCHC ZF
601
618
VICFNCGDPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
595 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9HLD5_POPTR
Populus trichocarpa
POPTR_0008s18340
N
0.000
B9HTP6_POPTR
Populus trichocarpa
POPTR_0010s06090
N
0.000
cassava35775.valid.m1
Manihot esculenta
cassava35775.valid.m1
N
0.000
Cucsa.075260
Cucumis sativus
Cucsa.075260
N
0.000
MDP0000946445
Malus x domestica
MDP0000946445
N
0.000
mgf025590m
Mimulus guttatus
mgf025590m
N
0.000
PK27686.1
Cannabis sativa
PK27686.1
N
0.000
ppa023941m
Prunus persica
ppa023941m
N
0.000