CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Genemark.10729_g
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Genemark.10729_g
T15665_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Genemark.10729_g
CCHC ZF
81
98
VTCYNCGERGHIARNCPH
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_01633
Chaetomium globosum
CHGG_01633
N
0.000
estExt_fgenesh1_pg.C_190026
Neurospora tetrasperma
estExt_fgenesh1_pg.C_190026
N
0.000
estExt_fgenesh3_kg.C_20419
Neurospora discreta
estExt_fgenesh3_kg.C_20419
N
0.000
estExt_Genewise1Plus.C_140391
Trichoderma atroviride
estExt_Genewise1Plus.C_140391
N
0.000
estExt_Genewise1Plus.C_20880
Myceliophthora thermophila
estExt_Genewise1Plus.C_20880
N
0.000
e_gw1.11.513.1
Trichoderma virens
e_gw1.11.513.1
N
0.000
e_gw1.3.309.1
Trichoderma reesei
e_gw1.3.309.1
N
0.000
e_gw1.4.1619.1
Cryphonectria parasitica
e_gw1.4.1619.1
N
0.000
e_gw1.4.1880.1
Thielavia terrestris
e_gw1.4.1880.1
N
0.000
fgenesh1_pg.sca_1_chr1_3_0000355
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000355
N
0.000
FGSG_01010
Fusarium graminearum
FGSG_01010
N
0.000
FOXG_00383
Fusarium oxysporum
FOXG_00383
N
0.000
FVEG_01134
Fusarium verticillioides
FVEG_01134
N
0.000
GLRG_01621
Colletotrichum graminicola
GLRG_01621
N
0.000
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.000
MGG_04442
Magnaporthe oryzae
MGG_04442
N
0.000
NCU02633
Neurospora crassa
NCU02633
N
0.000
SS1G_06737
Sclerotinia sclerotiorum
SS1G_06737
N
0.000