CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCU02633
(
Neurospora crassa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCU02633
T45198_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU02633T0
RRM
131
205
VYVTGLPLDATADEVAELFSRKCGVIAEEIDSGRPRIKMYTDANGNFKGDALIVFFKPQSVEMAIMLLDDTDFRF
NCU02633T0
RRM
351
406
KDDIREECAKLGPVTNVVLFDEEEEGIVSVKFATVEAAEACVHLMHGRAFDGRIVE
Links
Other
RRM
family RBPs
Other
Neurospora crassa
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_190026
Neurospora tetrasperma
estExt_fgenesh1_pg.C_190026
N
1.000
estExt_fgenesh3_kg.C_20419
Neurospora discreta
estExt_fgenesh3_kg.C_20419
N
0.992
CHGG_01633
Chaetomium globosum
CHGG_01633
N
0.908
estExt_Genewise1Plus.C_20880
Myceliophthora thermophila
estExt_Genewise1Plus.C_20880
N
0.901
e_gw1.4.1880.1
Thielavia terrestris
e_gw1.4.1880.1
N
0.863
GLRG_01621
Colletotrichum graminicola
GLRG_01621
N
0.802
FGSG_01010
Fusarium graminearum
FGSG_01010
N
0.802
fgenesh1_pg.sca_1_chr1_3_0000355
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000355
N
0.789
FOXG_00383
Fusarium oxysporum
FOXG_00383
N
0.788
FVEG_01134
Fusarium verticillioides
FVEG_01134
N
0.788
e_gw1.3.309.1
Trichoderma reesei
e_gw1.3.309.1
N
0.771
e_gw1.4.1619.1
Cryphonectria parasitica
e_gw1.4.1619.1
N
0.767
MGG_04442
Magnaporthe oryzae
MGG_04442
N
0.765
e_gw1.11.513.1
Trichoderma virens
e_gw1.11.513.1
N
0.748
SS1G_06737
Sclerotinia sclerotiorum
SS1G_06737
N
0.740
BC1G_03304
Botrytis cinerea
BC1G_03304
N
0.733
estExt_Genewise1Plus.C_140391
Trichoderma atroviride
estExt_Genewise1Plus.C_140391
N
0.718