CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DDX43
(
Erinaceus europaeus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSEEUG00000008838
T18728_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000008046
KH
68
126
LCFEVKNDCVGAVIGRGGSKIRDIQSTTNTKVQIIKGYPTAEVKIFGSKAMQTKAKAII
Links
Other
KH
family RBPs
Other
Erinaceus europaeus
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9H2A6_POPTR
Populus trichocarpa
POPTR_0004s06470
N
0.000
Cucsa.047830
Cucumis sativus
Cucsa.047830
N
0.000
Glyma05g27340.1
Glycine max
Glyma05g27340.1
N
0.000
Glyma08g10330.1
Glycine max
Glyma08g10330.1
N
0.000
LjT25I18.20.nc
Lotus japonicus
LjT25I18.20.nc
N
0.000
MDP0000212912
Malus x domestica
MDP0000212912
N
0.000
MDP0000408310
Malus x domestica
MDP0000408310
N
0.000
Medtr2g024360
Medicago truncatula
Medtr2g024360
N
0.000
mgf002683m
Mimulus guttatus
mgf002683m
N
0.000
PDK_20s1575061g002
Phoenix dactylifera
PDK_20s1575061g002
N
0.000
PK14411.1
Cannabis sativa
PK14411.1
N
0.000
ppa002887m
Prunus persica
ppa002887m
N
0.000