CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS1
(
Gasterosteus aculeatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSGACG00000006577
T18830_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000008702
KH
72
132
KERVLIPTKQYPRVNFVGKLLGPQGSTIKRLQEETGAKISVLGKGSMRDKNKEEELRKGGE
ENSGACP00000008708
KH
61
121
KERVLIPTKQYPRVNFVGKLLGPQGSTIKRLQEETGAKISVLGKGSMRDKNKEEELRKGGE
Links
Other
KH
family RBPs
Other
Gasterosteus aculeatus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSDARG00000078082
Danio rerio
ENSDARG00000078082
I
0.711
KHDRBS1
Oryzias latipes
ENSORLG00000020884
I
0.724
KHDRBS1
Tetraodon nigroviridis
ENSTNIG00000017471
I
0.711
KHDRBS1
Tetraodon nigroviridis
ENSTNIG00000013071
I
0.701
KHDRBS1
Takifugu rubripes
ENSTRUG00000012039
I
0.723
KHDRBS1
Oryzias latipes
ENSORLG00000017156
I
0.741
KHDRBS1
Myotis lucifugus
ENSMLUG00000008109
N
0.754
KHDRBS1
Macropus eugenii
ENSMEUG00000015720
N
0.754
KHDRBS1
Takifugu rubripes
ENSTRUG00000010001
I
0.701
khdrbs1b
Danio rerio
ENSDARG00000070475
I
0.711
khdrbs2
Xenopus tropicalis
ENSXETG00000004451
I
0.750