khdrbs1b (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000070475 T18636_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS1
M160_0.6 		Homo sapiens AUAAAAV RNAcompete
Ray et al.(2013)
RNCMPT00169 		0.824
Khdrbs1
M060_0.6 		Mus musculus UAAAAVV RNAcompete
Ray et al.(2013)
RNCMPT00062 		0.824
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.778
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000094247 KH 60 135

Links

Other KH family RBPs
Other Danio rerio RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSDARG00000078082 Danio rerio ENSDARG00000078082 I 1.000
KHDRBS1 Oryzias latipes ENSORLG00000020884 I 0.961
KHDRBS1 Takifugu rubripes ENSTRUG00000010001 I 0.935
KHDRBS1 Tetraodon nigroviridis ENSTNIG00000013071 I 0.935
KHDRBS1 Gasterosteus aculeatus ENSGACG00000009219 I 0.910
KHDRBS1 Taeniopygia guttata ENSTGUG00000017346 I 0.845
khdrbs1a Danio rerio ENSDARG00000052856 I 0.840
KHDRBS1 Anolis carolinensis ENSACAG00000011693 I 0.835
KHDRBS1 Oryzias latipes ENSORLG00000017156 I 0.827
KHDRBS1 Ochotona princeps ENSOPRG00000005131 I 0.824
KHDRBS1 Oryctolagus cuniculus ENSOCUG00000007654 I 0.824
KHDRBS1 Spermophilus tridecemlineatus ENSSTOG00000014138 I 0.824
KHDRBS1 Procavia capensis ENSPCAG00000009844 I 0.824
KHDRBS1 Tupaia belangeri ENSTBEG00000016857 I 0.824
KHDRBS1 Pteropus vampyrus ENSPVAG00000013289 I 0.824
ENSPPYG00000001605 Pongo pygmaeus ENSPPYG00000001605 I 0.824
KHDRBS1 Tarsius syrichta ENSTSYG00000004921 I 0.824
ENSCHOG00000006973 Choloepus hoffmanni ENSCHOG00000006973 I 0.824
LOC100414412 Callithrix jacchus ENSCJAG00000006580 I 0.824
KHDRBS1 Cavia porcellus ENSCPOG00000024148 I 0.824
KHDRBS1 Canis familiaris ENSCAFG00000010777 I 0.824
Q29RQ2_BOVIN Bos taurus ENSBTAG00000012497 I 0.824
KHDRBS1 Tursiops truncatus ENSTTRG00000009637 I 0.824
KHDRBS1 Vicugna pacos ENSVPAG00000006966 I 0.824
Ame_R010128 Ailuropoda melanoleuca Ame_R010128 I 0.824
KHDRBS1 Ornithorhynchus anatinus ENSOANG00000012357 I 0.824
KHDRBS1 Pan troglodytes ENSPTRG00000000469 I 0.824
KHDRBS1 Macaca mulatta ENSMMUG00000023438 I 0.824
Khdrbs1 Mus musculus ENSMUSG00000028790 D 0.824
KHDRBS1 Gorilla gorilla ENSGGOG00000008633 I 0.824
KHDRBS1 Loxodonta africana ENSLAFG00000009414 I 0.824
XM_001365874.1 Monodelphis domestica ENSMODG00000017551 I 0.824
KHDR1_CHICK Gallus gallus ENSGALG00000003272 I 0.824
KHDRBS1 Equus caballus ENSECAG00000019346 I 0.824
KHDRBS1 Felis catus ENSFCAG00000006511 I 0.824
KHDRBS1 Homo sapiens ENSG00000121774 D 0.824
KHDRBS1 Meleagris gallopavo ENSMGAG00000004455 I 0.824
KHDRBS1 Takifugu rubripes ENSTRUG00000012039 I 0.819
khdrbs1 Xenopus tropicalis ENSXETG00000005246 I 0.812
KHDRBS1 Sorex araneus ENSSARG00000008479 I 0.810
KHDRBS1 Tetraodon nigroviridis ENSTNIG00000017471 I 0.807
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.778
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.778
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.778
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.778
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.778
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.778
LOC100056966 Equus caballus ENSECAG00000021541 I 0.778
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.778
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.778
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.778
KHDRBS2 Homo sapiens ENSG00000112232 D 0.778
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.778
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.778
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.778
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.778
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.778
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.778
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.778
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.778
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.778
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.778
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.778
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.778
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.765
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.765
khdrbs2 Danio rerio ENSDARG00000069469 I 0.753
KHDRBS2 Takifugu rubripes ENSTRUG00000015760 I 0.753
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.728
KHDRBS2 Oryzias latipes ENSORLG00000010165 I 0.728
KHDRBS1 Gasterosteus aculeatus ENSGACG00000006577 N 0.711