CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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khdrbs2
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000004451
T19750_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.765
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000009676
KH
53
117
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHA
ENSXETP00000009677
KH
61
124
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKH
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHDRBS2
Sorex araneus
ENSSARG00000004121
N
0.797
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.765
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.765
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.765
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.765
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.765
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.765
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.765
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.765
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.765
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.765
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.765
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.765
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.765
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.765
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.765
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.765
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.765
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.765
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.765
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.765
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.765
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.765
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.765
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.753
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.753
KHDRBS2
Tetraodon nigroviridis
ENSTNIG00000016577
N
0.750
KHDRBS1
Gasterosteus aculeatus
ENSGACG00000006577
N
0.750
KHDRBS2
Takifugu rubripes
ENSTRUG00000015760
I
0.741
khdrbs2
Danio rerio
ENSDARG00000069469
I
0.741
KHDRBS2
Gasterosteus aculeatus
ENSGACG00000006097
I
0.716
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.704
KHDRBS3
Erinaceus europaeus
ENSEEUG00000007062
N
0.703