CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP7
(
Spermophilus tridecemlineatus
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSSTOG00000011789
T23436_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000010574
La
1
29
VDISLLVSFNKMKKLTTDGKLIARALKSS
ENSSTOP00000010574
RRM
59
122
VYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPP
ENSSTOP00000010574
RRM
395
445
RKQVRDTLAAISEVVYVDLLEGDTECHVRFKTPEDAQAVMNAYTEIKKKHC
Links
Other
La,RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R014598
Ailuropoda melanoleuca
Ame_R014598
N
0.806
ENSCHOG00000002379
Choloepus hoffmanni
ENSCHOG00000002379
N
0.794
ENSPPYG00000015010
Pongo pygmaeus
ENSPPYG00000015010
N
0.789
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.739
Larp7
Mus musculus
ENSMUSG00000027968
N
0.767
LARP7
Monodelphis domestica
ENSMODG00000005669
N
0.734
LARP7
Macaca mulatta
ENSMMUG00000017911
N
0.965
LARP7
Macropus eugenii
ENSMEUG00000004739
N
0.799
LARP7
Loxodonta africana
ENSLAFG00000015769
N
0.806
LARP7
Echinops telfairi
ENSETEG00000011692
N
0.777
LARP7
Cavia porcellus
ENSCPOG00000011830
N
0.778
LARP7
Canis familiaris
ENSCAFG00000011715
N
0.789