CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP7
(
Cavia porcellus
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSCPOG00000011830
T23360_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000010641
La
34
93
IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS
ENSCPOP00000010641
RRM
123
186
VYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPP
ENSCPOP00000010641
RRM
444
494
GRKQVRDMLAAISEVVYVDLLEGDTECHVRFKTPEAAQAVVNGHTEIKKKY
Links
Other
La,RRM
family RBPs
Other
Cavia porcellus
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LARP7
Loxodonta africana
ENSLAFG00000015769
N
0.955
LARP7
Canis familiaris
ENSCAFG00000011715
N
0.954
Ame_R014598
Ailuropoda melanoleuca
Ame_R014598
N
0.943
ENSCHOG00000002379
Choloepus hoffmanni
ENSCHOG00000002379
N
0.932
ENSPPYG00000015010
Pongo pygmaeus
ENSPPYG00000015010
N
0.926
Larp7
Mus musculus
ENSMUSG00000027968
N
0.920
LARP7
Echinops telfairi
ENSETEG00000011692
N
0.915
LARP7
Monodelphis domestica
ENSMODG00000005669
N
0.904
LARP7
Ornithorhynchus anatinus
ENSOANG00000009298
N
0.886
LARP7
Macropus eugenii
ENSMEUG00000004739
N
0.847
LARP7
Taeniopygia guttata
ENSTGUG00000001804
N
0.842
LARP7
Meleagris gallopavo
ENSMGAG00000010947
N
0.831
Q5ZIT4_CHICK
Gallus gallus
ENSGALG00000012048
N
0.831
LARP7
Spermophilus tridecemlineatus
ENSSTOG00000011789
N
0.778
larp7
Xenopus tropicalis
ENSXETG00000024097
N
0.767
LARP7
Ochotona princeps
ENSOPRG00000009594
N
0.763
LARP7
Macaca mulatta
ENSMMUG00000017911
N
0.756