CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000265231
(
Malus x domestica
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
MDP0000265231
T25196_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000265231
PUF
644
678
DITGHIVEFSADQHGSRFIQQKLENCSVEEKASVF
MDP0000265231
PUF
680
714
EVLPHASKLMTDVFGNYVIQKFFEYGTPQQRKELA
MDP0000265231
PUF
716
750
QLSGQILPLSLQMYGCRVIQKALEVIELEQKVQLV
MDP0000265231
PUF
752
786
ELDGHVMRCVRDQNGNHVIQKCIESIPTEKIRFII
MDP0000265231
PUF
788
823
AFRGQVATLSIHPYGCRVIQRVLEHCTDELQCQFIV
MDP0000265231
PUF
825
859
EILESVAGLAQDQYGNYVTQHVLERGKPNERRKII
MDP0000265231
PUF
861
895
KLSGHFVPLSQHKFASNVVEKCLEYGGAAERELLI
MDP0000265231
PUF
903
937
EGNDNLLVMMKDQYANYVVQKTLXICNDSQRVLLI
Links
Other
PUF
family RBPs
Other
Malus x domestica
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCING00000010611
Ciona intestinalis
ENSCING00000010611
N
0.000
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.12_#_635_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.12_#_635_#_11486_1_CFPN
N
0.000
fgenesh2_kg.12_#_754_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.12_#_754_#_11486_1_CFPN
N
0.000
fgenesh2_kg.14_#_548_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.14_#_548_#_11486_1_CFPN
N
0.000
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.17_#_294_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.17_#_294_#_11486_1_CFPN
N
0.000
fgenesh2_kg.18_#_121_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.18_#_121_#_11486_1_CFPN
N
0.000
fgenesh2_kg.1_#_1210_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.1_#_1210_#_11486_1_CFPN
N
0.000
fgenesh2_kg.20_#_21_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.20_#_21_#_11486_1_CFPN
N
0.000
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.4_#_2144_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_2144_#_11486_1_CFPN
N
0.000
fgenesh2_kg.4_#_2864_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_2864_#_11486_1_CFPN
N
0.000
fgenesh2_kg.5_#_1694_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.5_#_1694_#_11486_1_CFPN
N
0.000
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.6_#_1126_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.6_#_1126_#_11486_1_CFPN
N
0.000
fgenesh2_kg.7_#_2034_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.7_#_2034_#_11486_1_CFPN
N
0.000
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.8_#_1578_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.8_#_1578_#_11486_1_CFPN
N
0.000
fgenesh2_kg.9_#_513_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.9_#_513_#_11486_1_CFPN
N
0.000
K08D12.3
Caenorhabditis elegans
K08D12.3
N
0.000