MDP0000265231 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000265231 T25196_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000265231 PUF 644 678
MDP0000265231 PUF 680 714
MDP0000265231 PUF 716 750
MDP0000265231 PUF 752 786
MDP0000265231 PUF 788 823
MDP0000265231 PUF 825 859
MDP0000265231 PUF 861 895
MDP0000265231 PUF 903 937

Links

Other PUF family RBPs
Other Malus x domestica RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000898m Prunus persica ppa000898m N 0.911
PK12245.1 Cannabis sativa PK12245.1 N 0.900
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.858
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.843
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.836
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.836
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.836
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.819
MDP0000277305 Malus x domestica MDP0000277305 N 0.812
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.801
ppa016404m Prunus persica ppa016404m N 0.798
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.791
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.791
mgf006786m Mimulus guttatus mgf006786m N 0.791
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.784
mgf002285m Mimulus guttatus mgf002285m N 0.783
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.777
MDP0000313902 Malus x domestica MDP0000313902 N 0.777
30169.m006300 Ricinus communis 30169.m006300 N 0.773
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.760
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.760
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.753
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.746
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.734
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.723
PK11972.1 Cannabis sativa PK11972.1 N 0.723
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.722
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.720
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.719
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.715
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.714
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.709