RBM5 (Takifugu rubripes)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		ENSTRUG00000008292 T25673_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM5
M145_0.6 		Homo sapiens SAAGGRG RNAcompete
Ray et al.(2013)
RNCMPT00154 		0.738
RBM5
M053_0.6 		Homo sapiens GARGGWR RNAcompete
Ray et al.(2013)
RNCMPT00055 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000020742 RRM 107 178
ENSTRUP00000020742 RanBP ZF 188 216
ENSTRUP00000020742 RRM 246 315
ENSTRUP00000020743 RRM 107 178
ENSTRUP00000020743 RanBP ZF 188 216
ENSTRUP00000020743 RRM 246 315
ENSTRUP00000020744 RRM 108 179
ENSTRUP00000020744 RanBP ZF 189 218
ENSTRUP00000020744 RRM 276 345
ENSTRUP00000020745 RRM 108 179
ENSTRUP00000020745 RanBP ZF 189 218
ENSTRUP00000020745 RRM 276 345
ENSTRUP00000020746 RRM 108 179
ENSTRUP00000020746 RanBP ZF 189 218
ENSTRUP00000020746 RRM 276 345
ENSTRUP00000020747 RRM 1 70

Links

Other RanBP ZF,RRM family RBPs
Other Takifugu rubripes RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A0JMV4 Xenopus laevis A0JMV4 I 0.733
A6MKZ6_CALJA Callithrix jacchus ENSCJAG00000004740 I 0.739
AAH77408 Xenopus laevis AAH77408 I 0.740
AAI26020 Xenopus laevis AAI26020 I 0.733
Ame_R008692 Ailuropoda melanoleuca Ame_R008692 I 0.739
LOC100052535 Equus caballus ENSECAG00000020447 I 0.739
Q6DDU9 Xenopus laevis Q6DDU9 I 0.740
RBM5 Sus scrofa ENSSSCG00000011395 I 0.739
Rbm5 Rattus norvegicus ENSRNOG00000018153 I 0.739
RBM5 Pteropus vampyrus ENSPVAG00000006812 I 0.733
RBM5 Pan troglodytes ENSPTRG00000014946 I 0.739
RBM5 Oryzias latipes ENSORLG00000003369 I 0.895
RBM5 Anolis carolinensis ENSACAG00000008580 I 0.727
RBM5 Spermophilus tridecemlineatus ENSSTOG00000013856 I 0.739
RBM5 Taeniopygia guttata ENSTGUG00000006417 I 0.753
RBM5 Tetraodon nigroviridis ENSTNIG00000014742 I 0.936
RBM5 Tursiops truncatus ENSTTRG00000007717 I 0.739
RBM5 Vicugna pacos ENSVPAG00000009388 I 0.709
rbm5 Xenopus tropicalis ENSXETG00000007303 I 0.728
RBM5 Oryzias latipes ENSORLG00000001053 N 0.721
RBM5 Oryctolagus cuniculus ENSOCUG00000011652 I 0.728
RBM5 Canis familiaris ENSCAFG00000010866 I 0.739
RBM5 Cavia porcellus ENSCPOG00000008151 I 0.739
Rbm5 Dipodomys ordii ENSDORG00000007692 I 0.739
RBM5 Erinaceus europaeus ENSEEUG00000005943 I 0.739
RBM5 Echinops telfairi ENSETEG00000012773 I 0.719
RBM5 Homo sapiens ENSG00000003756 D 0.739
RBM5 Gasterosteus aculeatus ENSGACG00000000858 I 0.803
RBM5 Gasterosteus aculeatus ENSGACG00000010469 I 0.895
RBM5 Gallus gallus ENSGALG00000004626 I 0.747
RBM5 Ornithorhynchus anatinus ENSOANG00000006557 I 0.739
Rbm5 Mus musculus ENSMUSG00000032580 I 0.739
RBM5 Monodelphis domestica ENSMODG00000012301 I 0.738
RBM5 Macaca mulatta ENSMMUG00000004921 I 0.739
RBM5 Myotis lucifugus ENSMLUG00000007875 I 0.733
RBM5 Meleagris gallopavo ENSMGAG00000003972 I 0.753
RBM5 Loxodonta africana ENSLAFG00000006733 I 0.739
RBM5 Microcebus murinus ENSMICG00000016179 N 0.732
RBM5_BOVIN Bos taurus ENSBTAG00000006330 I 0.739