RBM5 (Tetraodon nigroviridis)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		ENSTNIG00000014742 T25669_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM5
M145_0.6 		Homo sapiens SAAGGRG RNAcompete
Ray et al.(2013)
RNCMPT00154 		0.713
RBM5
M053_0.6 		Homo sapiens GARGGWR RNAcompete
Ray et al.(2013)
RNCMPT00055 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017777 RRM 53 122
ENSTNIP00000017777 RanBP ZF 132 160
ENSTNIP00000017777 RRM 221 290

Links

Other RanBP ZF,RRM family RBPs
Other Tetraodon nigroviridis RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM5 Takifugu rubripes ENSTRUG00000008292 I 0.936
RBM5 Oryzias latipes ENSORLG00000003369 I 0.868
RBM5 Gasterosteus aculeatus ENSGACG00000010469 I 0.856
RBM5 Gasterosteus aculeatus ENSGACG00000000858 I 0.764
RBM5 Meleagris gallopavo ENSMGAG00000003972 I 0.727
RBM5 Taeniopygia guttata ENSTGUG00000006417 I 0.727
RBM5 Gallus gallus ENSGALG00000004626 I 0.722
RBM5 Ornithorhynchus anatinus ENSOANG00000006557 I 0.718
Rbm5 Rattus norvegicus ENSRNOG00000018153 I 0.713
RBM5 Sus scrofa ENSSSCG00000011395 I 0.713
RBM5 Spermophilus tridecemlineatus ENSSTOG00000013856 I 0.713
RBM5 Pan troglodytes ENSPTRG00000014946 I 0.713
RBM5 Loxodonta africana ENSLAFG00000006733 I 0.713
RBM5 Macaca mulatta ENSMMUG00000004921 I 0.713
RBM5 Erinaceus europaeus ENSEEUG00000005943 I 0.713
Rbm5 Mus musculus ENSMUSG00000032580 I 0.713
RBM5 Homo sapiens ENSG00000003756 D 0.713
LOC100052535 Equus caballus ENSECAG00000020447 I 0.713
Ame_R008692 Ailuropoda melanoleuca Ame_R008692 I 0.713
RBM5_BOVIN Bos taurus ENSBTAG00000006330 I 0.713
RBM5 Canis familiaris ENSCAFG00000010866 I 0.713
Rbm5 Dipodomys ordii ENSDORG00000007692 I 0.713
RBM5 Cavia porcellus ENSCPOG00000008151 I 0.713
A6MKZ6_CALJA Callithrix jacchus ENSCJAG00000004740 I 0.713
RBM5 Oryctolagus cuniculus ENSOCUG00000011652 I 0.709
AAH77408 Xenopus laevis AAH77408 I 0.709
Q6DDU9 Xenopus laevis Q6DDU9 I 0.709
RBM5 Tursiops truncatus ENSTTRG00000007717 I 0.708
RBM5 Myotis lucifugus ENSMLUG00000007875 I 0.707
RBM5 Pteropus vampyrus ENSPVAG00000006812 I 0.707
RBM5 Monodelphis domestica ENSMODG00000012301 I 0.707
RBM5 Anolis carolinensis ENSACAG00000008580 I 0.702
RBM5 Microcebus murinus ENSMICG00000016179 N 0.701
A0JMV4 Xenopus laevis A0JMV4 I 0.701
AAI26020 Xenopus laevis AAI26020 I 0.701
RBM5 Choloepus hoffmanni ENSCHOG00000009429 I 0.700