RBM5 (Tursiops truncatus)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		ENSTTRG00000007717 T25678_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM5
M145_0.6 		Homo sapiens SAAGGRG RNAcompete
Ray et al.(2013)
RNCMPT00154 		0.908
RBM5
M053_0.6 		Homo sapiens GARGGWR RNAcompete
Ray et al.(2013)
RNCMPT00055 		0.908
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000007300 RRM 98 169
ENSTTRP00000007300 RanBP ZF 186 208
ENSTTRP00000007300 RRM 226 295

Links

Other RanBP ZF,RRM family RBPs
Other Tursiops truncatus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G45630 Arabidopsis thaliana AT3G45630-TAIR-G N 0.000
AT5G60170 Arabidopsis thaliana AT5G60170-TAIR-G N 0.000
B9HPP2_POPTR Populus trichocarpa POPTR_0009s03130 N 0.000
B9IIZ2_POPTR Populus trichocarpa POPTR_0016s08560 N 0.000
B9MT79_POPTR Populus trichocarpa POPTR_0006s13450 N 0.000
cassava12925.valid.m1 Manihot esculenta cassava12925.valid.m1 N 0.000
cassava12926.valid.m1 Manihot esculenta cassava12926.valid.m1 N 0.000
cassava13567.valid.m1 Manihot esculenta cassava13567.valid.m1 N 0.000
cassava801.valid.m1 Manihot esculenta cassava801.valid.m1 N 0.000
cassava802.valid.m1 Manihot esculenta cassava802.valid.m1 N 0.000
Cucsa.051650 Cucumis sativus Cucsa.051650 N 0.000
Glyma11g15670.1 Glycine max Glyma11g15670.1 N 0.000
Glyma12g07790.1 Glycine max Glyma12g07790.1 N 0.000
Glyma13g40460.1 Glycine max Glyma13g40460.1 N 0.000
Glyma15g04950.1 Glycine max Glyma15g04950.1 N 0.000
GSVIVG00025102001 Vitis vinifera GSVIVG00025102001 N 0.000
LjT39B13.150.nc Lotus japonicus LjT39B13.150.nc N 0.000
MDP0000296717 Malus x domestica MDP0000296717 N 0.000
Medtr2g111500 Medicago truncatula Medtr2g111500 N 0.000
mgf016286m Mimulus guttatus mgf016286m N 0.000
mgf016475m Mimulus guttatus mgf016475m N 0.000
PK08517.1 Cannabis sativa PK08517.1 N 0.000
ppa000664m Prunus persica ppa000664m N 0.000
ppa025065m Prunus persica ppa025065m N 0.000
XM_002864625.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002022 N 0.000
XM_002877379.1 Arabidopsis lyrata fgenesh2_kg.5__939__AT3G45630.1 N 0.000