CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD23080
(
Drosophila simulans
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0194470
T25716_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0221482
RRM
229
301
IILFGLKKHVTEADIMGELIKVDMEPTSIRVMRKQQTGASRCFAFVEFKTVEEATRWMELTQGVLQLGDHRVT
FBpp0221482
RanBP ZF
308
337
RISDWTCIKCGASNFKRRFQCYMCNASRAE
FBpp0221482
RRM
379
425
QQRLPELAKTVSKVLVSRDVLTNASRGICYLNFDTLIDSMNVFNGLT
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila simulans
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG4896
Drosophila melanogaster
FBgn0031319
N
0.980
GE17429
Drosophila yakuba
FBgn0234896
N
0.894
GF15173
Drosophila ananassae
FBgn0092198
N
0.722
GG24777
Drosophila erecta
FBgn0116907
N
0.887
GM16804
Drosophila sechellia
FBgn0171717
N
1.000