LOC_Os07g19560 (Oryza sativa)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		LOC_Os07g19560 T25736_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os07g19560.1 RRM 14 92
LOC_Os07g19560.1 RanBP ZF 144 175
LOC_Os07g19560.1 RanBP ZF 217 245
LOC_Os07g19560.2 RRM 11 58
LOC_Os07g19560.2 RanBP ZF 110 141
LOC_Os07g19560.2 RanBP ZF 183 211

Links

Other RanBP ZF,RRM family RBPs
Other Oryza sativa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30100.m000780 Ricinus communis 30100.m000780 N 0.886
AC185415.3_FG005 Zea mays AC185415.3_FG005 N 0.950
AC233865.1_FG006 Zea mays AC233865.1_FG006 N 0.957
B9HI59_POPTR Populus trichocarpa POPTR_0008s08490 N 0.843
B9HY23_POPTR Populus trichocarpa POPTR_0010s17780 N 0.886
BGIOSIBCE024476 Oryza indica BGIOSIBCE024476 N 1.000
BGIOSIBCE029383 Oryza indica BGIOSIBCE029383 N 0.979
BRADI1G19280 Brachypodium distachyon BRADI1G19280 N 0.929
cassava6410.valid.m1 Manihot esculenta cassava6410.valid.m1 N 0.886
Cucsa.338570 Cucumis sativus Cucsa.338570 N 0.879
e_gw1.19.421.1 Selaginella moellendorfii e_gw1.19.421.1 N 0.814
Glyma11g11060.1 Glycine max Glyma11g11060.1 N 0.879
Glyma12g03260.1 Glycine max Glyma12g03260.1 N 0.879
GSVIVG00010206001 Vitis vinifera GSVIVG00010206001 N 0.914
LjSGA_030792.1 Lotus japonicus LjSGA_030792.1 N 0.890
LOC_Os09g12800 Oryza sativa LOC_Os09g12800 N 0.979
MDP0000121074 Malus x domestica MDP0000121074 N 0.879
MDP0000299312 Malus x domestica MDP0000299312 N 0.879
mgf016255m Mimulus guttatus mgf016255m N 0.886
PDK_20s1466551g001 Phoenix dactylifera PDK_20s1466551g001 N 0.871
PK07290.1 Cannabis sativa PK07290.1 N 0.872
ppa006646m Prunus persica ppa006646m N 0.872
ppa009031m Prunus persica ppa009031m N 0.872
SB02G032170 Sorghum bicolor Sb02g032170 N 0.964
TAF15 Arabidopsis thaliana AT1G50300-TAIR-G N 0.850
XM_002894200.1 Arabidopsis lyrata scaffold_104754.1 N 0.850