Q6DDU9 (Xenopus laevis)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		Q6DDU9 T25923_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM5
M145_0.6 		Homo sapiens SAAGGRG RNAcompete
Ray et al.(2013)
RNCMPT00154 		0.827
RBM5
M053_0.6 		Homo sapiens GARGGWR RNAcompete
Ray et al.(2013)
RNCMPT00055 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Q6DDU9 RRM 104 176
Q6DDU9 RanBP ZF 185 214
Q6DDU9 RRM 245 310

Links

Other RanBP ZF,RRM family RBPs
Other Xenopus laevis RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A0JMV4 Xenopus laevis A0JMV4 I 0.982
A6MKZ6_CALJA Callithrix jacchus ENSCJAG00000004740 I 0.838
AAH77408 Xenopus laevis AAH77408 I 1.000
AAI26020 Xenopus laevis AAI26020 I 0.982
Ame_R008692 Ailuropoda melanoleuca Ame_R008692 I 0.838
LOC100052535 Equus caballus ENSECAG00000020447 I 0.838
RBM5 Tupaia belangeri ENSTBEG00000005424 I 0.765
RBM5 Spermophilus tridecemlineatus ENSSTOG00000013856 I 0.838
RBM5 Sus scrofa ENSSSCG00000011395 I 0.838
RBM5 Microcebus murinus ENSMICG00000016179 N 0.831
Rbm5 Rattus norvegicus ENSRNOG00000018153 I 0.838
RBM5 Pteropus vampyrus ENSPVAG00000006812 I 0.831
RBM5 Pan troglodytes ENSPTRG00000014946 I 0.838
RBM5 Taeniopygia guttata ENSTGUG00000006417 I 0.817
RBM5 Tetraodon nigroviridis ENSTNIG00000014742 I 0.709
RBM5 Tursiops truncatus ENSTTRG00000007717 I 0.838
RBM5 Vicugna pacos ENSVPAG00000009388 I 0.803
rbm5 Xenopus tropicalis ENSXETG00000007303 I 0.982
RBM5 Takifugu rubripes ENSTRUG00000008292 I 0.740
RBM5 Felis catus ENSFCAG00000014639 N 0.786
RBM5 Macropus eugenii ENSMEUG00000012994 N 0.775
RBM5 Procavia capensis ENSPCAG00000005459 I 0.700
RBM5 Oryzias latipes ENSORLG00000003369 I 0.728
RBM5 Oryctolagus cuniculus ENSOCUG00000011652 I 0.825
RBM5 Canis familiaris ENSCAFG00000010866 I 0.838
RBM5 Choloepus hoffmanni ENSCHOG00000009429 I 0.763
RBM5 Cavia porcellus ENSCPOG00000008151 I 0.838
Rbm5 Dipodomys ordii ENSDORG00000007692 I 0.838
RBM5 Erinaceus europaeus ENSEEUG00000005943 I 0.838
RBM5 Echinops telfairi ENSETEG00000012773 I 0.836
RBM5 Homo sapiens ENSG00000003756 D 0.838
RBM5 Gasterosteus aculeatus ENSGACG00000000858 I 0.711
RBM5 Gallus gallus ENSGALG00000004626 I 0.811
RBM5 Gorilla gorilla ENSGGOG00000014490 I 0.760
RBM5 Ornithorhynchus anatinus ENSOANG00000006557 I 0.838
Rbm5 Mus musculus ENSMUSG00000032580 I 0.838
RBM5 Monodelphis domestica ENSMODG00000012301 I 0.831
RBM5 Macaca mulatta ENSMMUG00000004921 I 0.838
RBM5 Myotis lucifugus ENSMLUG00000007875 I 0.831
RBM5 Meleagris gallopavo ENSMGAG00000003972 I 0.817
RBM5 Loxodonta africana ENSLAFG00000006733 I 0.838
RBM5 Anolis carolinensis ENSACAG00000008580 I 0.774
RBM5_BOVIN Bos taurus ENSBTAG00000006330 I 0.838