CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FOXG_13842
(
Fusarium oxysporum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FOXG_13842
T29326_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FOXG_13842T0
RRM
147
217
IYIGRIPHGFYEHEMRQYFEQFGPIVALRLSRNKKTGASKHYAFVKFEEASTAEIVCKTMDNYLLFGHILK
Links
Other
RRM
family RBPs
Other
Fusarium oxysporum
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_90140
Trichoderma atroviride
estExt_fgenesh1_pg.C_90140
N
0.845
e_gw1.1.997.1
Trichoderma reesei
e_gw1.1.997.1
N
0.845
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.944
e_gw1.17.425.1
Trichoderma virens
e_gw1.17.425.1
N
0.845
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.972
FVEG_11271
Fusarium verticillioides
FVEG_11271
N
1.000