estExt_fgenesh1_pg.C_90140 (Trichoderma atroviride)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_90140 T50649_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_90140 RRM 182 252

Links

Other RRM family RBPs
Other Trichoderma atroviride RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.1.997.1 Trichoderma reesei e_gw1.1.997.1 N 0.958
e_gw1.17.425.1 Trichoderma virens e_gw1.17.425.1 N 0.958
FGSG_04392 Fusarium graminearum FGSG_04392 N 0.873
FOXG_13842 Fusarium oxysporum FOXG_13842 N 0.845
FVEG_11271 Fusarium verticillioides FVEG_11271 N 0.845
e_gw1.11.592.1 Nectria haematococca e_gw1.11.592.1 N 0.845
fgenesh1_pg.C_scaffold_2000511 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2000511 N 0.831
GLRG_08650 Colletotrichum graminicola GLRG_08650 N 0.803
MGG_12370 Magnaporthe oryzae MGG_12370 N 0.761
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.746
PABG_04180 Paracoccidioides brasiliensis PABG_04180 N 0.746
SS1G_03893 Sclerotinia sclerotiorum SS1G_03893 N 0.732
MCYG_01275 Microsporum canis MCYG_01275 N 0.732
AFLA_113610 Aspergillus flavus CADAFLAG00005095 N 0.732
AO090023000955 Aspergillus oryzae CADAORAG00008034 N 0.732
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.732
AB03792.1 Alternaria brassicicola AB03792.1 N 0.732
NFIA_109800 Neosartorya fischeri CADNFIAG00009499 N 0.732
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.732
BDBG_06195 Blastomyces dermatitidis BDBG_06195 N 0.732
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.718
TRV_00034 Trichophyton verrucosum TRV_00034 N 0.718
ATEG_05588 Aspergillus terreus CADATEAG00005000 N 0.718
An04g00680 Aspergillus niger CADANGAG00003776 N 0.718
AFUA_4G06350 Aspergillus fumigatus CADAFUAG00008260 N 0.718
TESG_01475 Trichophyton tonsurans TESG_01475 N 0.718
MGYG_01823 Microsporum gypseum MGYG_01823 N 0.718
TERG_07689 Trichophyton rubrum TERG_07689 N 0.718
CIMG_04180 Coccidioides immitis CIMG_04180 N 0.718
ARB_01674 Arthroderma benhamiae ARB_01674 N 0.718
fgenesh1_pg.C_scaffold_1000567 Sporobolomyces roseus fgenesh1_pg.C_scaffold_1000567 N 0.718
CPSG_03082 Coccidioides posadasii CPSG_03082 N 0.718
TEQG_06916 Trichophyton equinum TEQG_06916 N 0.718
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.718
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.718
fgenesh1_pg.C_scaffold_4000265 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000265 N 0.704
fgenesh1_pm.00609_#_590 Aspergillus carbonarius fgenesh1_pm.00609_#_590 N 0.704
BC1G_04453 Botrytis cinerea BC1G_04453 N 0.704
ANIA_04346 Aspergillus nidulans CADANIAG00006114 N 0.704
YALI0F14245g Yarrowia lipolytica YALI0F14245g N 0.704