CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HCAG_02503
(
Histoplasma capsulatum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
HCAG_02503
T29455_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCAG_02503T0
RRM
104
180
LFVSRLSYDVTEADLEREFGRFGPIERIRIVVDTHNPKNNAKKPHRGYAFIVYEREQDMKAAYKVTDGIRIKDRRVL
Links
Other
RRM
family RBPs
Other
Histoplasma capsulatum
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB04539.1
Alternaria brassicicola
AB04539.1
N
0.756
ACLA_016460
Aspergillus clavatus
CADACLAG00000809
N
0.805
AFLA_094660
Aspergillus flavus
CADAFLAG00009151
N
0.870
An14g04950
Aspergillus niger
CADANGAG00011432
N
0.857
ANIA_06903
Aspergillus nidulans
CADANIAG00007705
N
0.783
AO090120000497
Aspergillus oryzae
CADAORAG00011610
N
0.870
ATEG_06160
Aspergillus terreus
CADATEAG00000843
N
0.844
BDBG_08305
Blastomyces dermatitidis
BDBG_08305
N
0.961
CIMG_09358
Coccidioides immitis
CIMG_09358
N
0.857
CPSG_03908
Coccidioides posadasii
CPSG_03908
N
0.857
estExt_Genewise1Plus.C_12200
Trichoderma atroviride
estExt_Genewise1Plus.C_12200
N
0.709
estExt_Genewise1Plus.C_230422
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_230422
N
0.756
fgenesh1_pg.00710_#_132
Aspergillus carbonarius
fgenesh1_pg.00710_#_132
N
0.844
MCYG_03975
Microsporum canis
MCYG_03975
N
0.870
MGYG_07680
Microsporum gypseum
MGYG_07680
N
0.883
NFIA_073580
Neosartorya fischeri
CADNFIAG00007026
N
0.857
PMAA_033920
Penicillium marneffei
PMAA_033920
N
0.857
PTRG_05753
Pyrenophora tritici repentis
PTRG_05753
N
0.744
TEQG_03381
Trichophyton equinum
TEQG_03381
N
0.883
TERG_08496
Trichophyton rubrum
TERG_08496
N
0.883