CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm142714
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm142714
T32147_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm142714
RRM
25
77
KDDAFFQHFAKFGKMVYYETIRDRKGRLSYRYVQYFEESDAEKARKNSNPAYK
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_092660
Aspergillus clavatus
CADACLAG00008386
N
0.000
BDBG_05107
Blastomyces dermatitidis
BDBG_05107
N
0.000
ENSCING00000009595
Ciona intestinalis
ENSCING00000009595
N
0.000
fgenesh1_pg.00009_#_218
Aspergillus carbonarius
fgenesh1_pg.00009_#_218
N
0.000
fgenesh2_pg.scaffold_31000079
Branchiostoma floridae
fgenesh2_pg.scaffold_31000079
N
0.000
fgenesh2_pg.scaffold_614000012
Branchiostoma floridae
fgenesh2_pg.scaffold_614000012
N
0.000
HCAG_08820
Histoplasma capsulatum
HCAG_08820
N
0.000
Pc20g04370
Penicillium chrysogenum
Pc20g04370
N
0.000