CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP001460
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP001460
T32463_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
rump
M288_0.6
Drosophila melanogaster
Sequence logo not available
GGAGG
RIP-chip
Cook et al.(2011)
34_15781475
0.761
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP001460-PA
RRM
44
114
IYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDENNKPRGCGIVEFEKPEHVQMALEKMNRYDINGRNLV
AGAP001460-PA
RRM
235
304
IFVANLDYKVDAKKLKQVFKLAGKIQSLDLSVDKDGNSRGFAVIEYDHPVEAVQAISMFDRQMLFDRRMT
AGAP001460-PA
RRM
535
598
IIIRNMPSSWTWQTLRDKFRDVGEVKFAEIRGQDTGVVRFAKERDADVAIKLMDGTRFEGRTVD
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6MKH3_CALJA
Callithrix jacchus
ENSCJAG00000002368
N
0.000
AL662849.4
Homo sapiens
ENSG00000231044
N
0.000
AL844853.7
Homo sapiens
ENSG00000206357
N
0.000
Ame_R018444
Ailuropoda melanoleuca
Ame_R018444
N
0.000
BX005143.2
Homo sapiens
ENSG00000233801
N
0.000
CR388219.1
Homo sapiens
ENSG00000206268
N
0.000
CR759782.5
Homo sapiens
ENSG00000229363
N
0.000
ENSDARG00000078711
Danio rerio
ENSDARG00000078711
N
0.000
ENSPPYG00000016471
Pongo pygmaeus
ENSPPYG00000016471
N
0.000
LOC100051271
Equus caballus
ENSECAG00000012274
N
0.000
RDBP
Ochotona princeps
ENSOPRG00000003942
N
0.000
RDBP
Oryctolagus cuniculus
ENSOCUG00000007012
N
0.000
RDBP
Ornithorhynchus anatinus
ENSOANG00000009900
N
0.000
RDBP
Pan troglodytes
ENSPTRG00000017996
N
0.000
RDBP
Procavia capensis
ENSPCAG00000004108
N
0.000
RDBP
Tursiops truncatus
ENSTTRG00000005923
N
0.000
RDBP
Tarsius syrichta
ENSTSYG00000012132
N
0.000
RDBP
Pteropus vampyrus
ENSPVAG00000005135
N
0.000
Rdbp
Rattus norvegicus
ENSRNOG00000000420
N
0.000
RDBP
Sorex araneus
ENSSARG00000003684
N
0.000
RDBP
Sus scrofa
ENSSSCG00000001423
N
0.000
Rdbp
Mus musculus
ENSMUSG00000024369
N
0.000
RDBP
Monodelphis domestica
ENSMODG00000015063
N
0.000
RDBP
Macaca mulatta
ENSMMUG00000000735
N
0.000
RDBP
Canis familiaris
ENSCAFG00000000690
N
0.000
RDBP
Cavia porcellus
ENSCPOG00000023834
N
0.000
RDBP
Dasypus novemcinctus
ENSDNOG00000009997
N
0.000
Rdbp
Dipodomys ordii
ENSDORG00000011705
N
0.000
RDBP
Felis catus
ENSFCAG00000004518
N
0.000
RDBP
Homo sapiens
ENSG00000204356
N
0.000
RDBP
Gorilla gorilla
ENSGGOG00000002265
N
0.000
RDBP
Loxodonta africana
ENSLAFG00000028155
N
0.000
RDBP
Macropus eugenii
ENSMEUG00000006053
N
0.000
RDBP
Meleagris gallopavo
ENSMGAG00000001297
N
0.000
RDBP
Microcebus murinus
ENSMICG00000003287
N
0.000
RDBP
Myotis lucifugus
ENSMLUG00000000622
N
0.000
RDBP
Anolis carolinensis
ENSACAG00000011678
N
0.000