CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000017841
T35169_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000026322
RRM
346
409
LFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
89 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA3
Callithrix jacchus
ENSCJAG00000032542
N
0.000
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.000
HNRNPA3
Tarsius syrichta
ENSTSYG00000012949
N
0.000