ENSPPYG00000019504 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000019504 T40600_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.801
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.801
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000021852 RRM 61 114
ENSPPYP00000021852 RRM 184 250
ENSPPYP00000021852 RRM 360 426
ENSPPYP00000021852 RRM 477 541
ENSPPYP00000021853 RRM 89 155
ENSPPYP00000021853 RRM 265 331
ENSPPYP00000021853 RRM 382 446
ENSPPYP00000021854 RRM 100 153
ENSPPYP00000021854 RRM 223 289
ENSPPYP00000021854 RRM 399 465
ENSPPYP00000021854 RRM 516 549

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011358 Ailuropoda melanoleuca Ame_R011358 N 0.000
ENSMLUG00000002995 Myotis lucifugus ENSMLUG00000002995 N 0.000
ENSOCUG00000026069 Oryctolagus cuniculus ENSOCUG00000026069 N 0.000
ENSPPYG00000010167 Pongo pygmaeus ENSPPYG00000010167 N 0.000
LOC678741 Rattus norvegicus ENSRNOG00000015229 N 0.000
ZC3H4 Canis familiaris ENSCAFG00000004182 N 0.000
Zc3h4 Mus musculus ENSMUSG00000059273 N 0.000
ZC3H4 Ornithorhynchus anatinus ENSOANG00000001794 N 0.000
ZC3H4 Ochotona princeps ENSOPRG00000014889 N 0.000
ZC3H4 Pan troglodytes ENSPTRG00000011201 N 0.000
ZC3H4 Pteropus vampyrus ENSPVAG00000005687 N 0.000
ZC3H4 Sorex araneus ENSSARG00000014146 N 0.000
ZC3H4 Sus scrofa ENSSSCG00000003110 N 0.000
ZC3H4 Takifugu rubripes ENSTRUG00000007843 N 0.000
ZC3H4 Tarsius syrichta ENSTSYG00000000926 N 0.000
ZC3H4 Monodelphis domestica ENSMODG00000008978 N 0.000
ZC3H4 Macaca mulatta ENSMMUG00000014709 N 0.000
ZC3H4 Bos taurus ENSBTAG00000009286 N 0.000
ZC3H4 Callithrix jacchus ENSCJAG00000011601 N 0.000
ZC3H4 Cavia porcellus ENSCPOG00000012610 N 0.000
ZC3H4 Danio rerio ENSDARG00000078355 N 0.000
ZC3H4 Dasypus novemcinctus ENSDNOG00000003764 N 0.000
Zc3h4 Dipodomys ordii ENSDORG00000002726 N 0.000
ZC3H4 Equus caballus ENSECAG00000024342 N 0.000
ZC3H4 Echinops telfairi ENSETEG00000005763 N 0.000
ZC3H4 Homo sapiens ENSG00000130749 N 0.000
ZC3H4 Gasterosteus aculeatus ENSGACG00000012374 N 0.000
ZC3H4 Gorilla gorilla ENSGGOG00000013071 N 0.000
ZC3H4 Loxodonta africana ENSLAFG00000001586 N 0.000
ZC3H4 Microcebus murinus ENSMICG00000008786 N 0.000
ZC3H4 Anolis carolinensis ENSACAG00000003986 N 0.000