CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H4
(
Callithrix jacchus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCJAG00000011601
T02358_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000021368
CCCH ZF
402
427
KGKVICKYFVEGRCTWGDHCNFSHDI
ENSCJAP00000021368
CCCH ZF
431
456
KKRELCKFYITGFCARAENCPYMHDI
ENSCJAP00000021390
CCCH ZF
390
415
KGKVICKYFVEGRCTWGDHCNFSHDI
ENSCJAP00000021390
CCCH ZF
419
444
KKRELCKFYITGFCARAENCPYMHGD
ENSCJAP00000021390
CCCH ZF
445
458
FPCKLYHTTGNCIN
ENSCJAP00000047112
CCCH ZF
152
177
KGKVICKYFVEGRCTWGDHCNFSHDI
ENSCJAP00000047112
CCCH ZF
181
206
KKRELCKFYITGFCARAENCPYMHDI
Links
Other
CCCH ZF
family RBPs
Other
Callithrix jacchus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H4
Erinaceus europaeus
ENSEEUG00000000519
N
0.962
ZC3H4
Procavia capensis
ENSPCAG00000014919
N
0.942
ZC3H4
Pan troglodytes
ENSPTRG00000011201
N
0.868
ZC3H4
Ochotona princeps
ENSOPRG00000014889
N
0.868
ENSPPYG00000010167
Pongo pygmaeus
ENSPPYG00000010167
N
0.868
ZC3H4
Pteropus vampyrus
ENSPVAG00000005687
N
0.868
ZC3H4
Canis familiaris
ENSCAFG00000004182
N
0.868
ZC3H4
Bos taurus
ENSBTAG00000009286
N
0.868
ZC3H4
Tarsius syrichta
ENSTSYG00000000926
N
0.868
LOC678741
Rattus norvegicus
ENSRNOG00000015229
N
0.868
ZC3H4
Macaca mulatta
ENSMMUG00000014709
N
0.868
Zc3h4
Mus musculus
ENSMUSG00000059273
N
0.868
ZC3H4
Dasypus novemcinctus
ENSDNOG00000003764
N
0.868
ZC3H4
Gorilla gorilla
ENSGGOG00000013071
N
0.868
ZC3H4
Homo sapiens
ENSG00000130749
N
0.868
Zc3h4
Dipodomys ordii
ENSDORG00000002726
N
0.868
ZC3H4
Loxodonta africana
ENSLAFG00000001586
N
0.868
ZC3H4
Cavia porcellus
ENSCPOG00000012610
N
0.844
ZC3H4
Sus scrofa
ENSSSCG00000003110
N
0.844
Ame_R011358
Ailuropoda melanoleuca
Ame_R011358
N
0.842
ZC3H4
Monodelphis domestica
ENSMODG00000008978
N
0.842
ZC3H4
Ornithorhynchus anatinus
ENSOANG00000001794
N
0.842
ZC3H4
Equus caballus
ENSECAG00000024342
N
0.831
ENSOCUG00000026069
Oryctolagus cuniculus
ENSOCUG00000026069
N
0.829
ZC3H4
Microcebus murinus
ENSMICG00000008786
N
0.779
ENSMLUG00000010841
Myotis lucifugus
ENSMLUG00000010841
N
0.776
ENSMLUG00000002995
Myotis lucifugus
ENSMLUG00000002995
N
0.766
ZC3H4
Echinops telfairi
ENSETEG00000005763
N
0.766
ZC3H4
Sorex araneus
ENSSARG00000014146
N
0.766
ZC3H4
Danio rerio
ENSDARG00000078355
N
0.753
ZC3H4
Spermophilus tridecemlineatus
ENSSTOG00000016249
N
0.753
ZC3H4
Anolis carolinensis
ENSACAG00000003986
N
0.740
ZC3H4
Takifugu rubripes
ENSTRUG00000007843
N
0.714
ZC3H4
Gasterosteus aculeatus
ENSGACG00000012374
N
0.709
ZC3H4
Tetraodon nigroviridis
ENSTNIG00000013432
N
0.705