CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6B
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000016987
T42369_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043505
RRM
1492
1556
LVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYNSKQEAAKAQSALHMCVLGNTTIL
ENSTRUP00000043506
RRM
673
737
LVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYNSKQEAAKAQSALHMCVLGNTTIL
ENSTRUP00000043507
RRM
645
709
LVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYNSKQEAAKAQSALHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
114 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCSAVG00000003102
Ciona savignyi
ENSCSAVG00000003102
I
0.000
ENSXETG00000027221
Xenopus tropicalis
ENSXETG00000027221
N
0.000