ENSCSAVG00000003102 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000003102 T35962_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.707
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.707
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.707
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000005200 RRM 15 85
ENSCSAVP00000005200 RRM 103 173
ENSCSAVP00000005200 RRM 197 266
ENSCSAVP00000005200 RRM 302 370
ENSCSAVP00000005201 RRM 15 85
ENSCSAVP00000005201 RRM 103 173
ENSCSAVP00000005201 RRM 197 266
ENSCSAVP00000005201 RRM 302 370
ENSCSAVP00000005202 RRM 13 83
ENSCSAVP00000005202 RRM 101 171
ENSCSAVP00000005202 RRM 195 264
ENSCSAVP00000005202 RRM 300 368
ENSCSAVP00000005203 RRM 4 74
ENSCSAVP00000005203 RRM 92 149
ENSCSAVP00000005204 RRM 2 72
ENSCSAVP00000005204 RRM 90 159
ENSCSAVP00000005204 RRM 183 252
ENSCSAVP00000005204 RRM 288 356
ENSCSAVP00000005205 RRM 4 74
ENSCSAVP00000005205 RRM 92 161
ENSCSAVP00000005205 RRM 185 254
ENSCSAVP00000005205 RRM 290 358
ENSCSAVP00000005206 RRM 1 70
ENSCSAVP00000005206 RRM 88 158
ENSCSAVP00000005206 RRM 182 251
ENSCSAVP00000005206 RRM 287 355
ENSCSAVP00000005207 RRM 9 78
ENSCSAVP00000005207 RRM 114 182

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.911
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.871
WUBG_09254 Wuchereria bancrofti WUBG_09254 N 0.817
ENSXETG00000027221 Xenopus tropicalis ENSXETG00000027221 N 0.806
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.717
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.717
CAA40721 Xenopus laevis CAA40721 I 0.714
AAH52100 Xenopus laevis AAH52100 I 0.714
P20965 Xenopus laevis P20965 I 0.714
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.714
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.714
pabpc1b Danio rerio ENSDARG00000021140 I 0.711
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.710
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.710
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.710
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.710
AAA60936 Xenopus laevis AAA60936 I 0.710
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.710
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.710
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.710
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.710
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.710
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.710
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.710
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.710
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.710
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.710
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.710
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.710
PABPC1 Homo sapiens ENSG00000070756 D 0.710
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.710
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.710
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.710
Q6IP09 Xenopus laevis Q6IP09 I 0.707
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.707
PABPC4 Homo sapiens ENSG00000090621 D 0.707
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.707
AAI08463 Xenopus laevis AAI08463 I 0.707
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.707
LOC100054235 Equus caballus ENSECAG00000009396 I 0.707
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.707
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.707
pabpc1a Danio rerio ENSDARG00000017219 I 0.707
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.707
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.707
AAH72110 Xenopus laevis AAH72110 I 0.707
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.707
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.707
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.707
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.707
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.707
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.707
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.707
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.707
AGAP011092 Anopheles gambiae AGAP011092 I 0.706
Gm10110 Mus musculus ENSMUSG00000062093 I 0.703
pabpc1l Danio rerio ENSDARG00000002597 I 0.703
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.703
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.703
PABPC4 Gallus gallus ENSGALG00000003800 I 0.703
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.703
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.703
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.703