CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG20899
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0113083
T43403_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0139445
RRM
191
253
MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGS
FBpp0139445
RRM
315
381
FNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTK
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL009659
Aedes aegypti
AAEL009659
N
0.712
AGAP012054
Anopheles gambiae
AGAP012054
N
0.733
CPIJ006198
Culex quinquefasciatus
CPIJ006198
N
0.720
CPIJ018342
Culex quinquefasciatus
CPIJ018342
N
0.705
CpipJ_CPIJ006198
Culex pipiens
CpipJ_CPIJ006198
N
0.720
CpipJ_CPIJ018342
Culex pipiens
CpipJ_CPIJ018342
N
0.705
GF13176
Drosophila ananassae
FBgn0090209
N
0.977
GM19822
Drosophila sechellia
FBgn0174708
N
0.992
sm
Drosophila melanogaster
FBgn0003435
D
0.992