CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ12844
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0200079
T44039_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0227261
RRM
33
96
NKAHTEEDFREAFAPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEQMNGKTIGKTDR
FBpp0227261
RRM
124
186
FIVIPKTATEDDIRDEFAQWGEVENVTIVREKNNGSPKGFGYVRFTKFYYAAVAFENCSAKYK
FBpp0227261
RRM
271
334
VSNCVNQDQLWRLFDIIPGLDYCQIMREHGPRTNEAVVVYDNPEAAIYAKDKLHGLEYPMGERI
FBpp0227261
RRM
386
445
LSANLPHSILKNIFSCWKGLIDVYLLPNKNCGYVKYSERESAQKAIGVLNGAEICGTKIK
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG1316
Drosophila melanogaster
FBgn0035526
N
0.925
GA12086-RA
Drosophila pseudoobscura
FBgn0072134
N
0.932
GD13832
Drosophila simulans
FBgn0185529
N
0.925
GE21435
Drosophila yakuba
FBgn0068447
N
0.921
GF25059
Drosophila ananassae
FBgn0102051
N
0.897
GG15216
Drosophila erecta
FBgn0107468
N
0.925
GH15941
Drosophila grimshawi
FBgn0123412
N
0.984
GI16592
Drosophila mojavensis
FBgn0139340
N
0.980
GK10557
Drosophila willistoni
FBgn0212572
N
0.960
GL17872
Drosophila persimilis
FBgn0155475
N
0.932
GM14647
Drosophila sechellia
FBgn0169568
N
0.925