GJ23846 (Drosophila virilis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0210941 T44129_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
rump
M288_0.6 		Drosophila melanogaster Sequence logo not available GGAGG RIP-chip
Cook et al.(2011)
34_15781475 		0.941
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0238263 RRM 62 132
FBpp0238263 RRM 227 296
FBpp0238263 RRM 577 640

Links

Other RRM family RBPs
Other Drosophila virilis RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
8840_YGR159C Saccharomyces mikatae 8840_YGR159C N 0.000
8944_YGR159C Saccharomyces paradoxus 8944_YGR159C N 0.000
9984_YGR159C Saccharomyces bayanus 9984_YGR159C N 0.000
A7TNJ0_VANPO Vanderwaltozyma polyspora A7TNJ0_VANPO N 0.000
AFR107W Ashbya gossypii AFR107W N 0.000
CAGL0E03245g Candida glabrata CAGL0E03245g N 0.000
Cd36_00170 Candida dubliniensis Cd36_00170 N 0.000
CLUG_03443 Candida lusitaniae CLUG_03443 N 0.000
CPAG_01336 Candida parapsilosis CPAG_01336 N 0.000
CTRG_04290 Candida tropicalis CTRG_04290 N 0.000
DEHA0A13563g Debaryomyces hansenii DEHA0A13563g N 0.000
e_gwh1.1.1.1022.1 Pichia stipitis e_gwh1.1.1.1022.1 N 0.000
KLLA0C11495g Kluyveromyces lactis KLLA0C11495g N 0.000
KLTH0D03916g Kluyveromyces thermotolerans KLTH0D03916g N 0.000
LELG_01457 Lodderomyces elongisporus LELG_01457 N 0.000
NSR1 Saccharomyces cerevisiae YGR159C N 0.000
orf19.6090 Candida albicans orf19.6090 N 0.000
SAKL0H23562g Lachancea kluyveri SAKL0H23562g N 0.000
Scas_Contig621.10 Saccharomyces castellii Scas_Contig621.10 N 0.000
Skud_Contig1019.2 Saccharomyces kudriavzevii Skud_Contig1019.2 N 0.000
ZYRO0G07326g Zygosaccharomyces rouxii ZYRO0G07326g N 0.000