CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ23846
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0210941
T44129_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
rump
M288_0.6
Drosophila melanogaster
Sequence logo not available
GGAGG
RIP-chip
Cook et al.(2011)
34_15781475
0.941
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0238263
RRM
62
132
VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENVQKAMEKMNRYELNGRELV
FBpp0238263
RRM
227
296
VFVANLDYKVDSKKLKQVFKLAGKVQSVDLSLDKEGHSRGFAVVEYDHPVEAVQAISMLDRQMLYDRRMT
FBpp0238263
RRM
577
640
IIIKNVPLSCTWQTLRDKFRDVGDVKFAEIRGNDVGVVRFFKERDAELAIALMDGSRLDGRTIK
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
8840_YGR159C
Saccharomyces mikatae
8840_YGR159C
N
0.000
8944_YGR159C
Saccharomyces paradoxus
8944_YGR159C
N
0.000
9984_YGR159C
Saccharomyces bayanus
9984_YGR159C
N
0.000
A7TNJ0_VANPO
Vanderwaltozyma polyspora
A7TNJ0_VANPO
N
0.000
AFR107W
Ashbya gossypii
AFR107W
N
0.000
CAGL0E03245g
Candida glabrata
CAGL0E03245g
N
0.000
Cd36_00170
Candida dubliniensis
Cd36_00170
N
0.000
CLUG_03443
Candida lusitaniae
CLUG_03443
N
0.000
CPAG_01336
Candida parapsilosis
CPAG_01336
N
0.000
CTRG_04290
Candida tropicalis
CTRG_04290
N
0.000
DEHA0A13563g
Debaryomyces hansenii
DEHA0A13563g
N
0.000
e_gwh1.1.1.1022.1
Pichia stipitis
e_gwh1.1.1.1022.1
N
0.000
KLLA0C11495g
Kluyveromyces lactis
KLLA0C11495g
N
0.000
KLTH0D03916g
Kluyveromyces thermotolerans
KLTH0D03916g
N
0.000
LELG_01457
Lodderomyces elongisporus
LELG_01457
N
0.000
NSR1
Saccharomyces cerevisiae
YGR159C
N
0.000
orf19.6090
Candida albicans
orf19.6090
N
0.000
SAKL0H23562g
Lachancea kluyveri
SAKL0H23562g
N
0.000
Scas_Contig621.10
Saccharomyces castellii
Scas_Contig621.10
N
0.000
Skud_Contig1019.2
Saccharomyces kudriavzevii
Skud_Contig1019.2
N
0.000
ZYRO0G07326g
Zygosaccharomyces rouxii
ZYRO0G07326g
N
0.000