B9HMI6_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0008s05670 T45557_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s05670.1 RRM 46 116
POPTR_0008s05670.2 RRM 46 116

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27383.m000159 Ricinus communis 27383.m000159 N 0.817
B9HTI2_POPTR Populus trichocarpa POPTR_0010s21070 N 0.831
BGIOSIBCE006342 Oryza indica BGIOSIBCE006342 N 0.704
cassava13783.valid.m1 Manihot esculenta cassava13783.valid.m1 N 0.817
chr2.CM0405.110.nd Lotus japonicus chr2.CM0405.110.nd N 0.732
Cucsa.165410 Cucumis sativus Cucsa.165410 N 0.761
Glyma02g41510.1 Glycine max Glyma02g41510.1 N 0.775
Glyma14g07440.1 Glycine max Glyma14g07440.1 N 0.775
GSVIVG00016562001 Vitis vinifera GSVIVG00016562001 N 0.746
LOC_Os02g15310 Oryza sativa LOC_Os02g15310 N 0.704
LOC_Os12g38430 Oryza sativa LOC_Os12g38430 N 0.704
MDP0000284128 Malus x domestica MDP0000284128 N 0.718
MDP0000293285 Malus x domestica MDP0000293285 N 0.718
Medtr5g087290 Medicago truncatula Medtr5g087290 N 0.718
PDK_20s1460721g001 Phoenix dactylifera PDK_20s1460721g001 N 0.718
ppa010993m Prunus persica ppa010993m N 0.746
SB0514S002010 Sorghum bicolor Sb0514s002010 N 0.718
SB05G027700 Sorghum bicolor Sb05g027700 N 0.746
XM_002876258.1 Arabidopsis lyrata fgenesh2_kg.5__1965__AT3G55460.1 N 0.704