XM_002876258.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.5__1965__AT3G55460.1 T44550_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1965__AT3G55460.1 RRM 48 118

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
At-SCL30 Arabidopsis thaliana AT3G55460-TAIR-G N 0.958
Glyma14g07440.1 Glycine max Glyma14g07440.1 N 0.887
Glyma02g41510.1 Glycine max Glyma02g41510.1 N 0.887
SB05G027700 Sorghum bicolor Sb05g027700 N 0.859
chr2.CM0405.110.nd Lotus japonicus chr2.CM0405.110.nd N 0.859
cassava13783.valid.m1 Manihot esculenta cassava13783.valid.m1 N 0.845
Medtr5g087290 Medicago truncatula Medtr5g087290 N 0.845
LOC_Os12g38430 Oryza sativa LOC_Os12g38430 N 0.831
SB0514S002010 Sorghum bicolor Sb0514s002010 N 0.831
27383.m000159 Ricinus communis 27383.m000159 N 0.831
ppa010993m Prunus persica ppa010993m N 0.817
BRADI4G03940 Brachypodium distachyon BRADI4G03940 N 0.817
Cucsa.165410 Cucumis sativus Cucsa.165410 N 0.817
LOC_Os02g15310 Oryza sativa LOC_Os02g15310 N 0.803
BGIOSIBCE006342 Oryza indica BGIOSIBCE006342 N 0.803
PDK_20s1460721g001 Phoenix dactylifera PDK_20s1460721g001 N 0.789
B9HTI2_POPTR Populus trichocarpa POPTR_0010s21070 N 0.789
GSVIVG00016562001 Vitis vinifera GSVIVG00016562001 N 0.789
MDP0000293285 Malus x domestica MDP0000293285 N 0.775
MDP0000284128 Malus x domestica MDP0000284128 N 0.761
B9HMI6_POPTR Populus trichocarpa POPTR_0008s05670 N 0.704