CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw1.31.79.1
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.31.79.1
T49942_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.31.79.1
RRM
17
86
MFIGQIPRGMDENDLRKMCEEFGPVFQLNVLRDKVTGQSKGCCFVTYYSRKSALDAQNALHNIKTMPGMH
e_gw1.31.79.1
RRM
112
180
LFVGMLAKKLNENDVRMMFAPFGSIEDCTVLRDQNGQSRGCAFITYANRQSAQNCIKNMHHSQTMEGCS
e_gw1.31.79.1
RRM
394
464
LFIYHLPQEFTDPDLSQMFLPFGNVVSAKVFIDKQTNLSKCFGFVSYDSPSSAQSAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_870134
Daphnia pulex
estExt_fgenesh1_pg.C_870134
N
0.736
e_gw.91.28.1
Branchiostoma floridae
e_gw.91.28.1
I
0.719
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.848
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.733
GH11645
Drosophila grimshawi
FBgn0119125
I
0.733
GJ17718
Drosophila virilis
FBgn0204887
I
0.724
GK15495
Drosophila willistoni
FBgn0217500
I
0.729
GL18624
Drosophila persimilis
FBgn0156225
I
0.733