e_gw.91.28.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.91.28.1 T50259_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M110_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		0.706
aret
M003_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.91.28.1 RRM 16 85
e_gw.91.28.1 RRM 109 177
e_gw.91.28.1 RRM 368 438

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF2 Equus caballus ENSECAG00000006649 N 0.797
CELF2 Pan troglodytes ENSPTRG00000002284 N 0.797
CELF2 Erinaceus europaeus ENSEEUG00000005658 N 0.797
Cugbp2 Rattus norvegicus ENSRNOG00000023661 N 0.797
CELF2 Tupaia belangeri ENSTBEG00000007939 N 0.797
Celf2 Mus musculus ENSMUSG00000002107 N 0.797
CELF2 Cavia porcellus ENSCPOG00000012567 N 0.797
CELF2 Homo sapiens ENSG00000048740 N 0.797
ENSPPYG00000002083 Pongo pygmaeus ENSPPYG00000002083 N 0.797
CELF2 Loxodonta africana ENSLAFG00000013612 N 0.797
CELF2 Microcebus murinus ENSMICG00000007867 N 0.797
CELF2 Macaca mulatta ENSMMUG00000011468 N 0.797
CELF2 Oryctolagus cuniculus ENSOCUG00000004961 N 0.797
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.797
CELF2 Ochotona princeps ENSOPRG00000011502 N 0.797
CELF2_CHICK Gallus gallus ENSGALG00000006713 N 0.797
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.797
CUGBP2-1 Taeniopygia guttata ENSTGUG00000002136 N 0.797
AAH45035 Xenopus laevis AAH45035 N 0.797
Q7ZXE2 Xenopus laevis Q7ZXE2 N 0.797
Ame_R017712 Ailuropoda melanoleuca Ame_R017712 N 0.797
CELF2 Canis familiaris ENSCAFG00000004973 N 0.797
AAB09041 Xenopus laevis AAB09041 N 0.797
celf2 Xenopus tropicalis ENSXETG00000021992 N 0.797
CELF2 Anolis carolinensis ENSACAG00000007661 N 0.797
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.788
celf2 Danio rerio ENSDARG00000002131 N 0.784
CELF2 Tetraodon nigroviridis ENSTNIG00000007201 N 0.775
CELF2 Takifugu rubripes ENSTRUG00000010147 N 0.775
CELF1 Meleagris gallopavo ENSMGAG00000010629 N 0.769
CUGBP1 Taeniopygia guttata ENSTGUG00000010377 N 0.769
CELF1_CHICK Gallus gallus ENSGALG00000008097 N 0.769
ACH69783 Xenopus laevis ACH69783 N 0.769
CELF1 Macropus eugenii ENSMEUG00000007763 N 0.764
CELF1 Monodelphis domestica ENSMODG00000019913 N 0.764
CELF1 Anolis carolinensis ENSACAG00000002114 N 0.764
CELF1 Ornithorhynchus anatinus ENSOANG00000007896 N 0.759
CELF1 Takifugu rubripes ENSTRUG00000001711 N 0.759
CELF2 Tetraodon nigroviridis ENSTNIG00000016009 N 0.756
CELF2 Choloepus hoffmanni ENSCHOG00000002945 N 0.756
e_gw1.172.82.1 Capitella teleta e_gw1.172.82.1 I 0.756
CELF1 Tursiops truncatus ENSTTRG00000014157 N 0.755
CELF1 Vicugna pacos ENSVPAG00000000336 N 0.755
celf1 Xenopus tropicalis ENSXETG00000009044 N 0.755
CELF1 Oryctolagus cuniculus ENSOCUG00000001311 N 0.755
CELF1 Loxodonta africana ENSLAFG00000003484 N 0.755
CELF1 Cavia porcellus ENSCPOG00000007871 N 0.755
CELF1 Equus caballus ENSECAG00000007741 N 0.755
LOC100392717 Callithrix jacchus ENSCJAG00000020133 N 0.755
CELF1 Canis familiaris ENSCAFG00000008452 N 0.755
Ame_R009875 Ailuropoda melanoleuca Ame_R009875 N 0.755
A7MB95_BOVIN Bos taurus ENSBTAG00000002520 N 0.755
CELF1 Homo sapiens ENSG00000149187 N 0.755
celf1 Danio rerio ENSDARG00000005315 N 0.755
CELF1 Macaca mulatta ENSMMUG00000011657 N 0.755
CELF2 Takifugu rubripes ENSTRUG00000016905 N 0.751
CELF2 Oryzias latipes ENSORLG00000003894 N 0.746
AAI08575 Xenopus laevis AAI08575 N 0.745
O57406 Xenopus laevis O57406 N 0.745
AAC41243 Xenopus laevis AAC41243 N 0.745
CELF1 Ochotona princeps ENSOPRG00000003239 N 0.745
ENSPPYG00000003302 Pongo pygmaeus ENSPPYG00000003302 N 0.745
Celf1 Mus musculus ENSMUSG00000005506 N 0.745
Cugbp1 Rattus norvegicus ENSRNOG00000010379 N 0.745
Celf1 Dipodomys ordii ENSDORG00000013721 N 0.741
CELF2 Gasterosteus aculeatus ENSGACG00000004426 N 0.737
AAH57743 Xenopus laevis AAH57743 N 0.731
AAH70706 Xenopus laevis AAH70706 N 0.731
CELF1 Procavia capensis ENSPCAG00000002631 N 0.731
Q6PF35 Xenopus laevis Q6PF35 N 0.731
estExt_fgenesh1_pg.C_870134 Daphnia pulex estExt_fgenesh1_pg.C_870134 N 0.722
e_gw1.31.79.1 Lottia gigantea e_gw1.31.79.1 N 0.719
CELF1 Microcebus murinus ENSMICG00000007157 N 0.717