CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma11g13490.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma11g13490.1
T52791_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma11g13490.1
RRM
21
85
LWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLK
Glyma11g13490.1
RRM
98
162
LWVGGISQAVTKEDLEAEFHKFGTIEDFKFFRDRNTACVEFFNLEDACQAMKIMNGKRIGGEHIR
Glyma11g13490.1
RRM
251
309
AVQIDEQMLHNAMILFGEIERIKSFPSRNYSIVEFRSVDEARRAKEGLQGRLFNDPRIT
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
91084
Helobdella robusta
91084
N
0.000
BGIBMGA007585
Bombyx mori
BGIBMGA007585
N
0.000
Bm1_02935
Brugia malayi
Bm1_02935
N
0.000
CBN14593
Caenorhabditis brenneri
CBN14593
N
0.000
CRE20447
Caenorhabditis remanei
CRE20447
N
0.000
estExt_Genewise1.C_sca_180152
Lottia gigantea
estExt_Genewise1.C_sca_180152
N
0.000
LOAG_03270
Loa loa
LOAG_03270
N
0.000
Minc02990
Meloidogyne incognita
Minc02990
N
0.000
Minc06129
Meloidogyne incognita
Minc06129
N
0.000
ncbp-2
Caenorhabditis elegans
F26A3.2
N
0.000
NCBP2_ANOGA
Anopheles gambiae
AGAP002547
N
0.000
NCBP2_IXOSC
Ixodes scapularis
ISCW017479
N
0.000
Ppa-ncbp-2
Pristionchus pacificus
PPA17381
N
0.000
WUBG_16568
Wuchereria bancrofti
WUBG_16568
N
0.000