CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc02990
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc02990
T57772_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc02990
RRM
39
109
LYIGNLSYFTSEEQVWELFRRTGDIRRVIMGLDRFQKTPCGFCFVEYYTRADAEDALRYVNGTRLDDRVIR
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc06129
Meloidogyne incognita
Minc06129
N
1.000
Ppa-ncbp-2
Pristionchus pacificus
PPA17381
N
0.817
CBN14593
Caenorhabditis brenneri
CBN14593
N
0.761
CBG22194
Caenorhabditis briggsae
CBG22194
N
0.761
CRE20447
Caenorhabditis remanei
CRE20447
N
0.761
LOAG_03270
Loa loa
LOAG_03270
N
0.761
WUBG_16568
Wuchereria bancrofti
WUBG_16568
N
0.761
ncbp-2
Caenorhabditis elegans
F26A3.2
N
0.761
estExt_Genewise1.C_5160046
Capitella teleta
estExt_Genewise1.C_5160046
N
0.746
Sjc_0008080
Schistosoma japonicum
Sjc_0008080
N
0.746
Bm1_02935
Brugia malayi
Bm1_02935
N
0.746
BGIBMGA007585
Bombyx mori
BGIBMGA007585
N
0.746
NCBP2_AEDAE
Aedes aegypti
AAEL006135
N
0.746
NCBP2_IXOSC
Ixodes scapularis
ISCW017479
N
0.732
estExt_Genewise1.C_sca_180152
Lottia gigantea
estExt_Genewise1.C_sca_180152
N
0.732
CpipJ_CPIJ003555
Culex pipiens
CpipJ_CPIJ003555
N
0.732
NCBP2_ANOGA
Anopheles gambiae
AGAP002547
N
0.732
NCBP2_CULQU
Culex quinquefasciatus
CPIJ003555
N
0.732
GI23717
Drosophila mojavensis
FBgn0146442
N
0.718
GF16759
Drosophila ananassae
FBgn0093780
N
0.718
NCBP2
Vicugna pacos
ENSVPAG00000010369
N
0.718
amel4_ncbi_hmm3188
Apis mellifera
amel4_ncbi_hmm3188
N
0.718
GH15101
Drosophila grimshawi
FBgn0122576
N
0.718
GJ23276
Drosophila virilis
FBgn0210378
N
0.718
ncbp2
Danio rerio
ENSDARG00000014898
N
0.718
91084
Helobdella robusta
91084
N
0.718
NCBP2
Tursiops truncatus
ENSTTRG00000013908
N
0.704
gw.81.90.1
Branchiostoma floridae
gw.81.90.1
N
0.704
NCBP2
Taeniopygia guttata
ENSTGUG00000008864
N
0.704
NCBP2
Tupaia belangeri
ENSTBEG00000015222
N
0.704
Ame_R004608
Ailuropoda melanoleuca
Ame_R004608
N
0.704
B5G279_TAEGU
Taeniopygia guttata
ENSTGUG00000007323
N
0.704
ENSSTOG00000001584
Spermophilus tridecemlineatus
ENSSTOG00000001584
N
0.704
GK11244
Drosophila willistoni
FBgn0213255
N
0.704
gw.93.114.1
Branchiostoma floridae
gw.93.114.1
N
0.704
GG22670
Drosophila erecta
FBgn0114835
N
0.704
PHUM535920
Pediculus humanus
PHUM535920
N
0.704
fgeneshMC_pm.5_#_40
Mucor circinelloides
fgeneshMC_pm.5_#_40
N
0.704
ENSOPRG00000007634
Ochotona princeps
ENSOPRG00000007634
N
0.704
NCBP2
Equus caballus
ENSECAG00000016153
N
0.704
LOC100404338
Callithrix jacchus
ENSCJAG00000013735
N
0.704
NCBP2
Homo sapiens
ENSG00000114503
N
0.704
ENSMEUG00000004730
Macropus eugenii
ENSMEUG00000004730
N
0.704
ENSMEUG00000008126
Macropus eugenii
ENSMEUG00000008126
N
0.704
ENSCING00000016926
Ciona intestinalis
ENSCING00000016926
N
0.704
ENSCING00000003079
Ciona intestinalis
ENSCING00000003079
N
0.704
XP_002160076.1
Hydra magnipapillata
XP_002160076.1
N
0.704
nasonia_NCBI_hmm1532803
Nasonia vitripennis
nasonia_NCBI_hmm1532803
N
0.704
NCBP2_BOVIN
Bos taurus
ENSBTAG00000008873
N
0.704
NCBP2
Canis familiaris
ENSCAFG00000013100
N
0.704
NCBP2
Microcebus murinus
ENSMICG00000003162
N
0.704
NCBP2
Myotis lucifugus
ENSMLUG00000017500
N
0.704
NCBP2
Pan troglodytes
ENSPTRG00000015789
N
0.704
ENSPPYG00000014449
Pongo pygmaeus
ENSPPYG00000014449
N
0.704
NCBP2
Pteropus vampyrus
ENSPVAG00000017273
N
0.704
Pigz
Rattus norvegicus
ENSRNOG00000001746
N
0.704
ENSSSCG00000011835
Sus scrofa
ENSSSCG00000011835
N
0.704
NCBP2
Oryzias latipes
ENSORLG00000011235
N
0.704
NCBP2
Otolemur garnettii
ENSOGAG00000005009
N
0.704
NCBP2
Macaca mulatta
ENSMMUG00000007825
N
0.704
XM_001371285.1
Monodelphis domestica
ENSMODG00000023276
N
0.704
Ncbp2
Mus musculus
ENSMUSG00000022774
N
0.704
NCBP2
Oryctolagus cuniculus
ENSOCUG00000006738
N
0.704
ENSSSCG00000011840
Sus scrofa
ENSSSCG00000011840
N
0.704