CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AMAG_12737
(
Allomyces macrogynus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
AMAG_12737
T01187_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMAG_12737T0
CCCH ZF
93
118
PKTVLCVFFKSGQCQKGSKCKFSHDV
AMAG_12737T0
CCCH ZF
201
215
VCPNGGDTCKYKHAL
Links
Other
CCCH ZF
family RBPs
Other
Allomyces macrogynus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_095620
Aspergillus flavus
CADAFLAG00009247
N
0.829
AO090113000083
Aspergillus oryzae
CADAORAG00011692
N
0.829
orf19.1697
Candida albicans
orf19.1697
N
0.732
GLRG_05139
Colletotrichum graminicola
GLRG_05139
N
0.756
FGSG_10829
Fusarium graminearum
FGSG_10829
N
0.756
FOXG_12762
Fusarium oxysporum
FOXG_12762
N
0.756
FVEG_11503
Fusarium verticillioides
FVEG_11503
N
0.756
RO3G_08915
Rhizopus oryzae
RO3G_08915
N
0.702
YALI0D07018g
Yarrowia lipolytica
YALI0D07018g
N
0.732