CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_06140
(
Coccidioides immitis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CIMG_06140
T01296_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_06140T0
CCCH ZF
171
197
FAPDVCKDYKQTGFCGFGDTCKFLHAR
Links
Other
CCCH ZF
family RBPs
Other
Coccidioides immitis
RBPs
227 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_05046
Arthroderma benhamiae
ARB_05046
N
0.000
fgenesh1_pm.00772_#_139
Aspergillus carbonarius
fgenesh1_pm.00772_#_139
N
0.000
ACLA_080910
Aspergillus clavatus
CADACLAG00007889
N
0.000
AFLA_045910
Aspergillus flavus
CADAFLAG00005918
N
0.000
AFUA_2G09100
Aspergillus fumigatus
CADAFUAG00003903
N
0.000
ANIA_06074
Aspergillus nidulans
CADANIAG00006943
N
0.000
An12g04760
Aspergillus niger
CADANGAG00009919
N
0.000
AO090011000789
Aspergillus oryzae
CADAORAG00005493
N
0.000
BDBG_05461
Blastomyces dermatitidis
BDBG_05461
N
0.000
CIMG_01023
Coccidioides immitis
CIMG_01023
N
0.000
CPSG_02191
Coccidioides posadasii
CPSG_02191
N
0.000
FOXG_00686
Fusarium oxysporum
FOXG_00686
N
0.000
FVEG_00825
Fusarium verticillioides
FVEG_00825
N
0.000
HCAG_03684
Histoplasma capsulatum
HCAG_03684
N
0.000
MCYG_04687
Microsporum canis
MCYG_04687
N
0.000
MGYG_02023
Microsporum gypseum
MGYG_02023
N
0.000
PABG_01625
Paracoccidioides brasiliensis
PABG_01625
N
0.000
Pc16g10490
Penicillium chrysogenum
Pc16g10490
N
0.000
PMAA_029040
Penicillium marneffei
PMAA_029040
N
0.000
TEQG_02465
Trichophyton equinum
TEQG_02465
N
0.000
TERG_03290
Trichophyton rubrum
TERG_03290
N
0.000
TESG_02820
Trichophyton tonsurans
TESG_02820
N
0.000
TRV_01453
Trichophyton verrucosum
TRV_01453
N
0.000
UREG_00968
Uncinocarpus reesii
UREG_00968
N
0.000