CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFUA_2G09100
(
Aspergillus fumigatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFUAG00003903
T33493_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00003903
RRM
10
80
VFLGNIPYNLTEEQVKDILSSAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNLNDFEIMGRKIR
Links
Other
RRM
family RBPs
Other
Aspergillus fumigatus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NFIA_084630
Neosartorya fischeri
CADNFIAG00006736
N
1.000
ACLA_080910
Aspergillus clavatus
CADACLAG00007889
N
0.986
An12g04760
Aspergillus niger
CADANGAG00009919
N
0.986
fgenesh1_pm.00772_#_139
Aspergillus carbonarius
fgenesh1_pm.00772_#_139
N
0.986
BDBG_05461
Blastomyces dermatitidis
BDBG_05461
N
0.972
PABG_01625
Paracoccidioides brasiliensis
PABG_01625
N
0.972
HCAG_03684
Histoplasma capsulatum
HCAG_03684
N
0.972
AFLA_045910
Aspergillus flavus
CADAFLAG00005918
N
0.972
ANIA_06074
Aspergillus nidulans
CADANIAG00006943
N
0.972
AO090011000789
Aspergillus oryzae
CADAORAG00005493
N
0.972
PMAA_029040
Penicillium marneffei
PMAA_029040
N
0.972
UREG_00968
Uncinocarpus reesii
UREG_00968
N
0.958
CPSG_02191
Coccidioides posadasii
CPSG_02191
N
0.958
CIMG_01023
Coccidioides immitis
CIMG_01023
N
0.958
Pc16g10490
Penicillium chrysogenum
Pc16g10490
N
0.958
TERG_03290
Trichophyton rubrum
TERG_03290
N
0.944
TESG_02820
Trichophyton tonsurans
TESG_02820
N
0.944
TEQG_02465
Trichophyton equinum
TEQG_02465
N
0.944
MCYG_04687
Microsporum canis
MCYG_04687
N
0.944
MGYG_02023
Microsporum gypseum
MGYG_02023
N
0.944
ARB_05046
Arthroderma benhamiae
ARB_05046
N
0.817
TRV_01453
Trichophyton verrucosum
TRV_01453
N
0.817
FOXG_00686
Fusarium oxysporum
FOXG_00686
N
0.732
FVEG_00825
Fusarium verticillioides
FVEG_00825
N
0.732