CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00032807001
(
Vitis vinifera
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GSVIVG00032807001
T03903_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00032807001
CCCH ZF
327
349
VPCPEYRKGSCQKGDSCEYAHGV
Links
Other
CCCH ZF
family RBPs
Other
Vitis vinifera
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG13048
Drosophila erecta
FBgn0105321
N
0.000
GH18157
Drosophila grimshawi
FBgn0125625
N
0.000
CG1218
Drosophila melanogaster
FBgn0037377
N
0.000
GI10110
Drosophila mojavensis
FBgn0132876
N
0.000
GL24525
Drosophila persimilis
FBgn0162114
N
0.000
GM10841
Drosophila sechellia
FBgn0165787
N
0.000
GD19822
Drosophila simulans
FBgn0191311
N
0.000
GJ23331
Drosophila virilis
FBgn0210432
N
0.000
GK13433
Drosophila willistoni
FBgn0215441
N
0.000
GE10166
Drosophila yakuba
FBgn0228044
N
0.000