CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL24525
(
Drosophila persimilis
)
CCHH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF10283 (zf-CCHH)
IPR019406
FBgn0162114
T16558_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0188632
CCHH ZF
4
29
EDCKYGEKCYQRNAAHLAKYNHPAKT
Links
Other
CCHH ZF
family RBPs
Other
Drosophila persimilis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA11459-RA
Drosophila pseudoobscura
FBgn0071510
N
0.962
GK13433
Drosophila willistoni
FBgn0215441
N
0.808
GH18157
Drosophila grimshawi
FBgn0125625
N
0.808
GG13048
Drosophila erecta
FBgn0105321
N
0.731
GI10110
Drosophila mojavensis
FBgn0132876
N
0.731
GE10166
Drosophila yakuba
FBgn0228044
N
0.731
GD19822
Drosophila simulans
FBgn0191311
N
0.731
GJ23331
Drosophila virilis
FBgn0210432
N
0.731
GM10841
Drosophila sechellia
FBgn0165787
N
0.731
CG1218
Drosophila melanogaster
FBgn0037377
N
0.731