CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM10841
(
Drosophila sechellia
)
CCHH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF10283 (zf-CCHH)
IPR019406
FBgn0165787
T16560_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0192318
CCHH ZF
4
29
EDCKYWDKCYQQNPAHLSKYNHPKKQ
Links
Other
CCHH ZF
family RBPs
Other
Drosophila sechellia
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD19822
Drosophila simulans
FBgn0191311
N
1.000
CG1218
Drosophila melanogaster
FBgn0037377
N
1.000
GG13048
Drosophila erecta
FBgn0105321
N
0.923
GE10166
Drosophila yakuba
FBgn0228044
N
0.885
GH18157
Drosophila grimshawi
FBgn0125625
N
0.808
GJ23331
Drosophila virilis
FBgn0210432
N
0.808
GI10110
Drosophila mojavensis
FBgn0132876
N
0.808
GL24525
Drosophila persimilis
FBgn0162114
N
0.731
GA11459-RA
Drosophila pseudoobscura
FBgn0071510
N
0.731
GK13433
Drosophila willistoni
FBgn0215441
N
0.731