XP_001196290.1 (Strongylocentrotus purpuratus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 XP_001196290.1 T06617_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001196290.1 CCCH ZF 177 203

Links

Other CCCH ZF family RBPs
Other Strongylocentrotus purpuratus RBPs

243 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL001778 Aedes aegypti AAEL001778 N 0.852
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.778
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.704
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.704
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.815
AGAP007068 Anopheles gambiae AGAP007068 N 0.852
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.815
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.815
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.815
CWC24 Ashbya gossypii CWC24 N 0.704
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.778
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.778
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.778
An02g05190 Aspergillus niger CADANGAG00002035 N 0.778
4131 Aureococcus anophagefferens 4131 N 0.815
EDO07311.1 Babesia bovis EDO07311.1 N 0.815
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.815
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.704
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.852
orf19.2105 Candida albicans orf19.2105 N 0.000
Cd36_15260 Candida dubliniensis Cd36_15260 N 0.000
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.704
PGUG_02083 Candida guilliermondii PGUG_02083 N 0.000
CLUG_01324 Candida lusitaniae CLUG_01324 N 0.000
CPAG_04594 Candida parapsilosis CPAG_04594 N 0.000
CTRG_01084 Candida tropicalis CTRG_01084 N 0.000
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.889
PK05761.1 Cannabis sativa PK05761.1 N 0.852
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.741
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.815
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.852
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.741
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.741
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.741
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.704
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.815
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.778
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.815
CMU_031370 Cryptosporidium muris CMU_031370 N 0.778
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.815
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.815
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.852
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.852
DEHA0A07084g Debaryomyces hansenii DEHA0A07084g N 0.000
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.000
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.704
GF17636 Drosophila ananassae FBgn0094654 N 0.852
GG23724 Drosophila erecta FBgn0115865 N 0.852
GH22886 Drosophila grimshawi FBgn0130343 N 0.852
CG4973 Drosophila melanogaster FBgn0038772 N 0.852
GI22714 Drosophila mojavensis FBgn0145441 N 0.852
GL12088 Drosophila persimilis FBgn0149696 N 0.852
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.852
GM17684 Drosophila sechellia FBgn0172592 N 0.852
GD19337 Drosophila simulans FBgn0190839 N 0.852
GJ23438 Drosophila virilis FBgn0210538 N 0.889
GK22373 Drosophila willistoni FBgn0067112 N 0.852
GE25648 Drosophila yakuba FBgn0242710 N 0.852
gm1.100391 Emiliania huxleyi gm1.100391 N 0.741
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.852
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.852
185736 Helobdella robusta 185736 N 0.852
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.815
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.704
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.741
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.741
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.704
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.778
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.704
LELG_01192 Lodderomyces elongisporus LELG_01192 N 0.000
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.852
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.704
MDP0000274000 Malus x domestica MDP0000274000 N 0.852
MDP0000202598 Malus x domestica MDP0000202598 N 0.852
MDP0000182690 Malus x domestica MDP0000182690 N 0.852
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.815
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.852
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.852
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.778
MCYG_07006 Microsporum canis MCYG_07006 N 0.741
mgf009866m Mimulus guttatus mgf009866m N 0.852
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.815
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.778
NCU01954 Neurospora crassa NCU01954 N 0.704
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.852
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.852
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.741
Pc22g15470 Penicillium chrysogenum Pc22g15470 N 0.704
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.778
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.852
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.852
PITG_04905 Phytophthora infestans PITG_04905 N 0.815
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.852
s_444298 Phytophthora sojae s_444298 N 0.815
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.000
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.778
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.852
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.704
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.741
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.741
ppa009728m Prunus persica ppa009728m N 0.852
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.741
29733.m000763 Ricinus communis 29733.m000763 N 0.852
29733.m000748 Ricinus communis 29733.m000748 N 0.852
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.741
CWC24 Saccharomyces cerevisiae YLR323C N 0.000
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.000
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.704
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.704
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.815
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.815
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.704
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.741
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.704
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.000
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.741
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.778
SB04G009270 Sorghum bicolor Sb04g009270 N 0.852
TA05795 Theileria annulata TA05795 N 0.815
TP01_0812 Theileria parva TP01_0812 N 0.815
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.704
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.778
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.778
UM05163 Ustilago maydis UM05163 N 0.778
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.741
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.741
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.741
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.852
ZYRO0G10956g Zygosaccharomyces rouxii ZYRO0G10956g N 0.704