LOC_Os05g07000 (Oryza sativa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		LOC_Os05g07000 T07400_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g07000.1 RRM 20 82
LOC_Os05g07000.1 CCHC ZF 108 125
LOC_Os05g07000.1 CCHC ZF 130 147

Links

Other CCHC ZF,RRM family RBPs
Other Oryza sativa RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.727
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.707
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.717
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.707
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.707
BGIOSIBCE017670 Oryza indica BGIOSIBCE017670 N 0.990