CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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At-RS2Z
(
Arabidopsis thaliana
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
AT3G53500-TAIR-G
T07157_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G53500.1-P
RRM
1
34
MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRIT
AT3G53500.1-P
CCHC ZF
58
75
GRCFNCGVDGHWARDCTA
AT3G53500.1-P
CCHC ZF
80
97
NKCYRCGERGHIERNCKN
AT3G53500.2-P
RRM
13
75
LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRIT
AT3G53500.2-P
CCHC ZF
99
116
GRCFNCGVDGHWARDCTA
AT3G53500.2-P
CCHC ZF
121
138
NKCYRCGERGHIERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.990
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.980
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.914
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.909
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.909
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.899
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.899
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.899
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.889
29805.m001527
Ricinus communis
29805.m001527
N
0.889
GSVIVG00025580001
Vitis vinifera
GSVIVG00025580001
N
0.886
ppa009294m
Prunus persica
ppa009294m
N
0.879
AC235022_4
Medicago truncatula
AC235022_4
N
0.879
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.879
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.879
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.879
mgf009930m
Mimulus guttatus
mgf009930m
N
0.869
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.869
ppa009074m
Prunus persica
ppa009074m
N
0.869
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.869
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.859
PK26144.1
Cannabis sativa
PK26144.1
N
0.859
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.848
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.848
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.838
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.838
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.838
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.828
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.828
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.828
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.828
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.818
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.818
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.818
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.808
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.808
chr1.CM0033.10.nd
Lotus japonicus
chr1.CM0033.10.nd
N
0.800
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.798
PK05606.1
Cannabis sativa
PK05606.1
N
0.789
GRMZM2G083975
Zea mays
GRMZM2G083975
N
0.757
mgf016290m
Mimulus guttatus
mgf016290m
N
0.753
ppa009671m
Prunus persica
ppa009671m
N
0.732
LOC_Os05g07000
Oryza sativa
LOC_Os05g07000
N
0.717
BGIOSIBCE017670
Oryza indica
BGIOSIBCE017670
N
0.707