XM_002877876.1 (Arabidopsis lyrata)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		fgenesh1_pm.C_scaffold_5001437 T07373_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_5001437 RRM 13 75
fgenesh1_pm.C_scaffold_5001437 CCHC ZF 99 116
fgenesh1_pm.C_scaffold_5001437 CCHC ZF 121 138

Links

Other CCHC ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.990
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.970
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.909
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.909
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.899
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.899
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.899
29805.m001527 Ricinus communis 29805.m001527 N 0.889
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.889
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.879
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.879
AC235022_4 Medicago truncatula AC235022_4 N 0.879
ppa009294m Prunus persica ppa009294m N 0.879
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.879
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.879
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.869
ppa009074m Prunus persica ppa009074m N 0.869
mgf009930m Mimulus guttatus mgf009930m N 0.869
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.869
PK26144.1 Cannabis sativa PK26144.1 N 0.859
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.848
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.848
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.848
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.838
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.838
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.838
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.828
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.828
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.818
SB09G001910 Sorghum bicolor Sb09g001910 N 0.818
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.818
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.808
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.808
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.808
SB03G005500 Sorghum bicolor Sb03g005500 N 0.808
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.798
LOC_Os05g07000 Oryza sativa LOC_Os05g07000 N 0.727
BGIOSIBCE017670 Oryza indica BGIOSIBCE017670 N 0.717