CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC_Os01g19000
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os01g19000
T10729_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g19000.1
CCHC ZF
272
289
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF14754
Drosophila ananassae
FBgn0091781
N
0.000
GG10287
Drosophila erecta
FBgn0102596
N
0.000
GH13061
Drosophila grimshawi
FBgn0120538
N
0.000
CG18787
Drosophila melanogaster
FBgn0042125
N
0.000
GI17681
Drosophila mojavensis
FBgn0140422
N
0.000
GL19578
Drosophila persimilis
FBgn0157176
N
0.000
GA15081-RA
Drosophila pseudoobscura
FBgn0075106
N
0.000
GM26462
Drosophila sechellia
FBgn0181315
N
0.000
GD22145
Drosophila simulans
FBgn0193555
N
0.000
GJ17466
Drosophila virilis
FBgn0204638
N
0.000
GK15175
Drosophila willistoni
FBgn0217180
N
0.000
GE12566
Drosophila yakuba
FBgn0230297
N
0.000
NUPL2
Oryzias latipes
ENSORLG00000005203
N
0.000