CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM26462
(
Drosophila sechellia
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0181315
T03773_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0207939
CCCH ZF
1
19
MVVCRFFQQGSCRYGTKCK
Links
Other
CCCH ZF
family RBPs
Other
Drosophila sechellia
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD22145
Drosophila simulans
FBgn0193555
N
1.000
GE12566
Drosophila yakuba
FBgn0230297
N
0.947
GG10287
Drosophila erecta
FBgn0102596
N
0.947
GA15081-RA
Drosophila pseudoobscura
FBgn0075106
N
0.895
GL19578
Drosophila persimilis
FBgn0157176
N
0.895
CG18789
Drosophila melanogaster
FBgn0042127
N
0.895
CG18787
Drosophila melanogaster
FBgn0042125
N
0.895
GJ17466
Drosophila virilis
FBgn0204638
N
0.789
GK15175
Drosophila willistoni
FBgn0217180
N
0.789
GF14754
Drosophila ananassae
FBgn0091781
N
0.789
NUPL2
Oryzias latipes
ENSORLG00000005203
N
0.737
GH13061
Drosophila grimshawi
FBgn0120538
N
0.737
GI17681
Drosophila mojavensis
FBgn0140422
N
0.737