CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ17466
(
Drosophila virilis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0204638
T03792_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0231883
CCCH ZF
2
19
GVCRFFQQGSCRFGTKCH
Links
Other
CCCH ZF
family RBPs
Other
Drosophila virilis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI17681
Drosophila mojavensis
FBgn0140422
N
0.944
GH13061
Drosophila grimshawi
FBgn0120538
N
0.944
GK15175
Drosophila willistoni
FBgn0217180
N
0.889
GA15081-RA
Drosophila pseudoobscura
FBgn0075106
N
0.842
GE12566
Drosophila yakuba
FBgn0230297
N
0.842
GL19578
Drosophila persimilis
FBgn0157176
N
0.842
GM26462
Drosophila sechellia
FBgn0181315
N
0.789
GD22145
Drosophila simulans
FBgn0193555
N
0.789
GF14754
Drosophila ananassae
FBgn0091781
N
0.789
GG10287
Drosophila erecta
FBgn0102596
N
0.789
CG18787
Drosophila melanogaster
FBgn0042125
N
0.737
CG18789
Drosophila melanogaster
FBgn0042127
N
0.737